BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZC10RM1.SCF screened BAC_end
         (1007 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1719                                                         404   e-112

>3x_Contig1719 
          Length = 15804

 Score =  404 bits (204), Expect = e-112
 Identities = 207/208 (99%)
 Strand = Plus / Minus

                                                                         
Query: 83    atattgctggagatatgctatgagcaagagcggagtaacgagaatagacgctctttcgct 142
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14880 atattgttggagatatgctatgagcaagagcggagtaacgagaatagacgctctttcgct 14821

                                                                         
Query: 143   ccctcgggccataaaacctttatccgttctttcagcttagctcatctcaggtgcattttg 202
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14820 ccctcgggccataaaacctttatccgttctttcagcttagctcatctcaggtgcattttg 14761

                                                                         
Query: 203   tcagaggccggccctttagttcatctctttccttcttcggtttgcgtacttttcatttcg 262
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14760 tcagaggccggccctttagttcatctctttccttcttcggtttgcgtacttttcatttcg 14701

                                         
Query: 263   ttcaacgtcgttactgtgtggaggggta 290
             ||||||||||||||||||||||||||||
Sbjct: 14700 ttcaacgtcgttactgtgtggaggggta 14673


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,645
Number of Sequences: 1807
Number of extensions: 15645
Number of successful extensions: 205
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)