BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC11FM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 987 0.0
>3x_Contig1252
Length = 5616
Score = 987 bits (498), Expect = 0.0
Identities = 579/598 (96%), Gaps = 6/598 (1%)
Strand = Plus / Minus
Query: 90 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tacaaatgtgtcattaaaagaaaccccgtaagtttctttcatcctttcacggactaataa 4080
Query: 150 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 ggtggcttcgtagcgcttattggaggagaacccgacgaagaacgggtcaatctgtttcct 4020
Query: 210 gtactgtttttttaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 269
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 gtactgttttttcaaactgtaagtaccggtatcgaaattaccggtcggctcatggtaatc 3960
Query: 270 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 actgtactggtttaaatacaagtcaaatgcaggatgcttagtaacgtgttcagggattgc 3900
Query: 330 ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 ctcaactaatgaactataactgcactttcgaaaacagagagagtggataatttctgattt 3840
Query: 390 catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 catagtactttcgaaaccttcaactgaagtcgaagcacatagagctctagtttctgtcat 3780
Query: 450 taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 taaacgtattaaagtaaggaaacattgttctgtcatggcgattgtcaaactctcttctgg 3720
Query: 510 gtagtcacctattggaattccttctgcccagtatttgagttcccatcgcgttag-aaatt 568
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 3719 gtagtcacctattggaattccttctgcccagtatttgagtccccatcgcgttagaaaatt 3660
Query: 569 taccatgaaatcttgtggatccg-attacacatttgaaaactg-accagggaaaaattac 626
||||||||||| |||||||||| || ||||| |||||||||| || ||| |||||| ||
Sbjct: 3659 aaccatgaaatcatgtggatccgcataacaca-ttgaaaactgaacgaggaaaaaatcac 3601
Query: 627 ttaaagt-agtgaatccacgcatgctgaatttgggatacattttcaattgaagctgaa 683
|||||| ||||||| ||||||||||| |||| | |||||||||||||||| ||||||
Sbjct: 3600 -taaagtaagtgaattcacgcatgctgtattttgtatacattttcaattgatgctgaa 3544
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,887
Number of Sequences: 1807
Number of extensions: 13887
Number of successful extensions: 120
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)