BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZC11RM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1794                                                        1411   0.0  

>3x_Contig1794 
          Length = 36744

 Score = 1411 bits (712), Expect = 0.0
 Identities = 810/834 (97%), Gaps = 7/834 (0%)
 Strand = Plus / Minus

                                                                        
Query: 59   aagcgctgacagtacgaggttttaatttaattgt-aatttggatggatcaccaagtaaca 117
            ||||||| |||||| ||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 4215 aagcgctcacagtaggaggttttaatttaattttcaatttggatggatcaccaagtaaca 4156

                                                                        
Query: 118  cttcttcgtatatcctgtaaagagatgaaggatattgattccaaacacgttttaacaact 177
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4155 cttcttcgtatatcctgtaaagagatgaaggatattgattccaaacacgttttaacaact 4096

                                                                        
Query: 178  gcttagcttcttcaatgcaggacaatttccaataagaatatacggcagtcattcccagtc 237
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 gcttagcttcttcaatgcaggacaatttccaataagaatatacggcagtcattcccagtc 4036

                                                                        
Query: 238  ctaaagtaaaccactgtttgtataggttgaataaaggattctttatcatttgaataatgt 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4035 ctaaagtaaaccactgtttgtataggttgaataaaggattctttatcatttgaataatgt 3976

                                                                        
Query: 298  actgatattcatcattggcagccaaataatgatccatgaaatatcttgctcctaaaggat 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3975 actgatattcatcattggcagccaaataatgatccatgaaatatcttgctcctaaaggat 3916

                                                                        
Query: 358  cttccaaaggtgataaagaaagaagagttttacaccactgagcggctgttgaaacggcac 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3915 cttccaaaggtgataaagaaagaagagttttacaccactgagcggctgttgaaacggcac 3856

                                                                        
Query: 418  ctctttgagatacgatttgaatatatctcatgatagccaaataaaactgtctgttgtaaa 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3855 ctctttgagatacgatttgaatatatctcatgatagccaaataaaactgtctgttgtaaa 3796

                                                                        
Query: 478  aatatatgtagggaagttggaaatccttagcagtgaactcaatcccatttttcaaacaac 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3795 aatatatgtagggaagttggaaatccttagcagtgaactcaatcccatttttcaaacaac 3736

                                                                        
Query: 538  ggtcgaagacaaatagtgcacgttcaaccaaaccattactgttagatttgtcaccttgcc 597
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3735 ggtcgaagacaaatagtgcacgttcaaccaaaccattactgttagatttgtcaccttgcc 3676

                                                                        
Query: 598  ttacgcatatcaaggcaacttgtaagagccctggtacatgataagggaattgcgaagata 657
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3675 ttacgcatatcaaggcaacttgtaagagccctggtacatgataagggaattgcgaagata 3616

                                                                        
Query: 658  ttattgatattagtgcttcatgatcagggtgtaagactgtactcangtagaattcggtta 717
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3615 ttattgatattagtgcttcatgatcagggtgtaagactgtactcaggtagaattcggtta 3556

                                                                        
Query: 718  aagcctttttgctattggtatcgttt-aagcatcgaatttataataaagtaaatgcttta 776
            |||||||||||||||||||||||||| ||||||||||||||||||||   |||||| |||
Sbjct: 3555 aagcctttttgctattggtatcgtttaaagcatcgaatttataataagtaaaatgc-tta 3497

                                                                        
Query: 777  gacatttggcggtcaacatcgtctttgatgacagcattccaattcaaagnacgctgtcat 836
            |||  || ||| ||||||||||||||||||||||||| ||||| ||||| |||||| |||
Sbjct: 3496 gaccatttgcgttcaacatcgtctttgatgacagcatcccaatccaaaggacgctgccat 3437

                                                                  
Query: 837  cttcgaccatttttgttagatcgtccgttggacaacttttttcaggatgaattc 890
            | ||||||| |||||||||||||| |||| |||||| ||||||| |||||||||
Sbjct: 3436 c-tcgacca-ttttgttagatcgt-cgttagacaac-tttttcaagatgaattc 3387


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 1807
Number of extensions: 7214
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)