BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC12FM1.SCF screened BAC_end
(953 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1216 1070 0.0
>3x_Contig1216
Length = 5132
Score = 1070 bits (540), Expect = 0.0
Identities = 597/614 (97%), Gaps = 2/614 (0%)
Strand = Plus / Minus
Query: 79 aagcttcagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccatta 138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 aagcttcagtgtcctgtttgtagagcacctttaccaccactttagaggccattgccatta 2072
Query: 139 tgtcgtagcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaac 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 tgtcgtagcatggacagtgtcacgtttgcagccttttctatacgcagtataatttttaac 2012
Query: 199 cttaaattatgaaaatgattttatgattcataacttcaaatactcacttatcttgcacaa 258
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 cttaaattatgaaaatgacattatgattcataacttcaaatactcacttatcttgcacaa 1952
Query: 259 caacgaagataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactatta 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 caacgaagataggaaaaagcagagaacaagcaccaccagtaattgcaatcatgactatta 1892
Query: 319 ggcatccacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaa 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 ggcatccacaaaggtatgaatgagtatatcctacttatacaataatttaattccttttaa 1832
Query: 379 ccgggctgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgtt 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 ccgggctgatactaactgatcgtattggatctatatttttagcgtcaaagcatgcctgtt 1772
Query: 439 cgacatggattgcttgttaataaacaccgaagacatgtacactgttgctataaataaggt 498
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 cgacatggatggcttgttaataaacaccgaagacatgtacactgttgctataaataaggt 1712
Query: 499 cttggaggcacatgacanaggtactatgtctttggatctgaaagtgcagttgcaaggttt 558
||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 1711 cttggaggcacatgacaaaggtactatgtcttgggatctgaagttgcagttgcaaggttt 1652
Query: 559 gcctggtccagaagctggccgttaggttatngaatattatgatttacctttgtcattcga 618
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 1651 gcctggtccagaagctggccgtaaggttattgaatattatgatttacctttgtcattcga 1592
Query: 619 agaatttgatacgttgaataggaaacatta-gcaattctgttgccaacgaaccaattttc 677
|||||||||||||||||||||||||||| | ||||| |||| ||||||| | ||| ||||
Sbjct: 1591 agaatttgatacgttgaataggaaacatcaggcaatcctgtggccaacg-agcaaatttc 1533
Query: 678 ttcctggaacatta 691
| ||||||||||||
Sbjct: 1532 tccctggaacatta 1519
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,472
Number of Sequences: 1807
Number of extensions: 10472
Number of successful extensions: 85
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)