BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZC12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1696 1368 0.0
>3x_Contig1696
Length = 16725
Score = 1368 bits (690), Expect = 0.0
Identities = 749/765 (97%), Gaps = 3/765 (0%)
Strand = Plus / Plus
Query: 50 gaacctttccttcttatctgtgttagagagcggatctacacatgtgaactccacagtatg 109
||||||||||||||| || ||||| |||||||| | ||||||||||||||||||||||||
Sbjct: 7867 gaacctttccttcttctccgtgtttgagagcggttttacacatgtgaactccacagtatg 7926
Query: 110 agggatagggtgtttttgtatgtgttctgaaactgttcttttgtgctccttctcagttcc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7927 agggatagggtgtttttgtatgtgttctgaaactgttcttttgtgctccttctcagttcc 7986
Query: 170 tgtggggacctcctcgtgagtcaggcaagaggctacgacgctttgtacttcgaatacttg 229
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 7987 tgtggggacctcctcgtgagtcaggcaagaggctacgacgctttgtacgtcgaatacttg 8046
Query: 230 atcggtgtttaacgagagagttacattgtatgtcacagcggtcgaacaattggataggct 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8047 atcggtgtttaacgagagagttacattgtatgtcacagcggtcgaacaattggataggct 8106
Query: 290 cgaagattgcaatttagaatccacatcagcaaagatagttttgaaaactctttcgtcttc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8107 cgaagattgcaatttagaatccacatcagcaaagatagttttgaaaactctttcgtcttc 8166
Query: 350 tgttagatcaattttcaaaacagtatcctttaattccatacctggcaattgtaaattgat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8167 tgttagatcaattttcaaaacagtatcctttaattccatacctggcaattgtaaattgat 8226
Query: 410 ctctttcggatattcggagcctgcatcaaaaacaagctttgatatattagtgttttgaat 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8227 ctctttcggatattcggagcctgcatcaaaaacaagctttgatatattagtgttttgaat 8286
Query: 470 agaaaatccaaaagaatgagtagttctatctatgactttcattggtcgcgtcttgaattc 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8287 agaaaatccaaaagaatgagtagttctatctatgactttcattggtcgcgtcttgaattc 8346
Query: 530 cttggataattggacgccacgaatggctgctccattgacggcagattcatcagagttgac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8347 cttggataattggacgccacgaatggctgctccattgacggcagattcatcagagttgac 8406
Query: 590 atttttagaaattaagctggctcctagatggttttccaattgctttttgacgaaaggcac 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8407 atttttagaaattaagctggctcctagatggttttccaattgctttttgacgaaaggcac 8466
Query: 650 cctagtagaaccaccagttaatatcacagaantccaatctttaacattcagtgctttacc 709
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 8467 cctagtagaaccaccagttaatatcacagaatccaaatctttaacattcagtgctttacc 8526
Query: 710 gttcattggagattctagcgtggacaaaatggtttctataac-acggattgtaattctgc 768
||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||
Sbjct: 8527 gttcaatggagattctagcgtggacaaaattggttctataacaacggattgtaattctgc 8586
Query: 769 cacgaattcttcaaac-ttgctctagt-ataatagttttgaagtc 811
|||||||||||||||| |||||||||| ||| |||||||||||||
Sbjct: 8587 cacgaattcttcaaactttgctctagtaatagtagttttgaagtc 8631
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7040
Number of Sequences: 1807
Number of extensions: 7040
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)