BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZD01RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1801                                                        1382   0.0  

>3x_Contig1801 
          Length = 57606

 Score = 1382 bits (697), Expect = 0.0
 Identities = 730/736 (99%), Gaps = 5/736 (0%)
 Strand = Plus / Plus

                                                                         
Query: 49    tatccacgtccgggtaatgaaagtaccgctttttccaatctcttgatcaaatggtgttat 108
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30365 tatccacgtccgggtaatgaaagtaccgctttttccaatctcttgatcaaatggtgttat 30424

                                                                         
Query: 109   atgctcgaatagatcttcatttgatacagatatatgttacgtccgttcatcattgcatga 168
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30425 at-ctcgaatagatcttcatttgatacagatatatgttacgtccgttcatcattgcatga 30483

                                                                         
Query: 169   tactttcactattctaaagctgtctattatagttataggttatattgtttgccttgcacg 228
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30484 tactttcactattctaaagctgtctattatagttataggttatattgtttgccttgcacg 30543

                                                                         
Query: 229   tctcaaaaagtaagtctttctgttataatgtctgatgttctagcttttgcagaaatagtg 288
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30544 tctcaaaaagtaagtctttctgttataatgtctgatgttctagcttttgcagaaatagtg 30603

                                                                         
Query: 289   cagggctatattcaatcgctagaagaactcaaagagacaaaattcgatagtaatagtgaa 348
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30604 cagggctatattcaatcgctagaagaactcaaagagacaaaattcgatagtaatagtgaa 30663

                                                                         
Query: 349   ttgttctctgaagtgtcccaggaacttgtcagatccaaggaattactgctacagttacag 408
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30664 ttgttctctgaagtgtcccaggaacttgtcagatccaaggaattactgctacagttacag 30723

                                                                         
Query: 409   gagagggagaatatactgaaattgagagaatcaggaccagattcagagtcaccaccatta 468
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30724 gagagggagaatatactgaaattgagagaatcaggaccagattcagagtcaccaccatta 30783

                                                                         
Query: 469   ccagagattaatggtgatatagtagagactttgtcatgtgttatcacagacgataatata 528
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30784 ccagagattaatggtgatatagtagagactttgtcatgtgttatcacagacgataatata 30843

                                                                         
Query: 529   acgaacgtatcacttgttggcgaagttgccatcaatggtaccaagtgggatcaaagaacg 588
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30844 acgaacgtatcacttgttggcgaagttgccatcaatggtaccaagtgggatcaaagaacg 30903

                                                                         
Query: 589   agtgatttgtatatgaaattcaataatgttagttccgttaagattaacgacacattcctg 648
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30904 agtgatttgtatatgaaattcaataatgttagttccgttaagattaacgacacattcctg 30963

                                                                         
Query: 649   gagccagtggatgtggttcagaatatatacaaattgaaacgtgaacgcgaatgggacaac 708
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 30964 gagccagtggatgtggttcagaatatatacaaattgaaacgtgaacgcgaatgggacaac 31023

                                                                         
Query: 709   gtggttacaggattagtgaaatatgcagtgaccaaatttaccacaggtttcaatgtccgt 768
             ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||  
Sbjct: 31024 gtggttacaggattagtgaaatatgcagtga-caaatttaccacagg-ttcaatgtcc-- 31079

                             
Query: 769   gattctaatgacaccc 784
             ||||||| ||||||||
Sbjct: 31080 gattctagtgacaccc 31095


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6963
Number of Sequences: 1807
Number of extensions: 6963
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)