BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD02RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1729 1213 0.0
>3x_Contig1729
Length = 15481
Score = 1213 bits (612), Expect = 0.0
Identities = 692/714 (96%), Gaps = 4/714 (0%)
Strand = Plus / Plus
Query: 185 atttcttgttcattttatatgaaacaatataaaaaattgtgatattccattgtaaagaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atttcttgttcattttatatgaaacaatataaaaaattgtgatattccattgtaaagaaa 60
Query: 245 tgaaacatcaaatcaaaggaacgtgtagatagcgtattctccgttattcaatacggcttg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgaaacatcaaatcaaaggaacgtgtagatagcgtattctccgttattcaatacggcttg 120
Query: 305 gaacttttgatatgacgaattagaaaactgtgatatcatattattattgagaaagctata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaacttttgatatgacgaattagaaaactgtgatatcatattattattgagaaagctata 180
Query: 365 cataaaatatgtcgacaaaaaaatgactgtacaggatgagttaattgctaatgctgaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cataaaatatgtcgacaaaaaaatgactgtacaggatgagttaattgctaatgctgaata 240
Query: 425 ctgataggttgcagttttatcgcaaattagtaagaactaacttatagagtcagcatcaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctgataggttgcagttttatcgcaaattagtaagaactaacttatagagtcagcatcaat 300
Query: 485 cgccgaactgaaaactgatgaacctgatgtgattacgaccaaagagagtgataattgttg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 cgccgaactgaaaactgatgaacctgatgtgattacgaccaaagagagtgataattgttg 360
Query: 545 tggagaaaagctggagggaaataattcctgcattaaaaattgtaaaaaagtangtgtttt 604
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 361 tggagaaaagctggagggaaataattcctgcattaaaaattgtaaaaaagtaggtgtttt 420
Query: 605 attaaggctcattcataaagatagcaacgcattctacgtcattaccaggtgaggagatct 664
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 421 attaaggctcattcataaagatagcaacgcattctacgtcattacca-gtgaggagatct 479
Query: 665 caatgtnagggttgatttgatagtgtttgagatcttgttgacaacgtttccattctcgtc 724
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caatgtaa-ggttgatttgatagtgtttgagatcttgttgacaacgtttccattctcgtc 538
Query: 725 agtgttgtgagtctccctttgttgcacagatcttggaacaccac-tttgggatcggattg 783
|||| ||||||||||| ||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 539 agtggtgtgagtctccttttgttgcacagatcttggaacaccacttttggtatcgtattg 598
Query: 784 atatccttctttatgttgcgat-aaccatgcgactttgcctccggagtgggaccaactgg 842
||||||||||| |||||||||| |||||||||||||||| || | |||||||| | |||
Sbjct: 599 atatccttcttcatgttgcgataaaccatgcgactttgcttcggaagtgggacgatctgt 658
Query: 843 gtttccttgttcatcaactgacacatttcttggatgcctaatgctggctgagga 896
|||||||||||||||||||||||||||||||| ||| ||| || || |||||||
Sbjct: 659 gtttccttgttcatcaactgacacatttcttgtatgtctattgttgtctgagga 712
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7193
Number of Sequences: 1807
Number of extensions: 7193
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)