BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZD03FM1.SCF screened BAC_end (939 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1413 872 0.0 >3x_Contig1413 Length = 8782 Score = 872 bits (440), Expect = 0.0 Identities = 541/567 (95%), Gaps = 6/567 (1%) Strand = Plus / Minus Query: 88 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6703 ccattgatttactacagcttcgggcagtatatccttgaacttctcagtggagttgctcat 6644 Query: 148 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6643 tattgataaaattagttcataaagttgcactaaacgaatgcagacgatggacctgcataa 6584 Query: 208 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6583 tgccatagttactggtgattgttcaaatatgtacgttaagagttttggaaatactctttg 6524 Query: 268 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6523 ccaaagagccgcatcgaccccatattcagattcacaaagtctgactaagatgttcgtctt 6464 Query: 328 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctt 387 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6463 agatttcatggttaacttgacaagtctagacttttcggccacactaagcgattgcttctc 6404 Query: 388 cagttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6403 aggttctagcagttttggaatatcataagatgggagcatatcgatcaatcttgatccact 6344 Query: 448 ttccgctaccaaacgagaagaagaatcttgagtgacctttattatatgttgttgcctttt 507 ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| Sbjct: 6343 ttccgctaccaaacgagaagaag-atcttgagtgacctttatcatatgttgttgcctttt 6285 Query: 508 gcataaacgctttatcgaattttgaagtcaattgaa-aaattgaattgctaattcgcgga 566 |||| ||||||||||||||||| ||||||||||||| || ||||||||||||| ||||| Sbjct: 6284 gcatcaacgctttatcgaatttggaagtcaattgaagaatttgaattgctaatcggcgga 6225 Query: 567 tataagcattnggcgct-caaaaaaagaa-aaaacgttggctttgacatctttcaagaca 624 || ||||| | |||||| || | |||||| ||| ||||| ||| |||||||| || |||| Sbjct: 6224 tagaagca-tcggcgctgcagagaaagaataaaccgttgccttcgacatcttccacgaca 6166 Query: 625 gtttggggtttttttccattcattttt 651 |||| |||| |||||||||||| |||| Sbjct: 6165 gttt-gggtatttttccattcaatttt 6140 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 19,543 Number of Sequences: 1807 Number of extensions: 19543 Number of successful extensions: 434 Number of sequences better than 1.0e-20: 1 length of query: 939 length of database: 10,358,551 effective HSP length: 16 effective length of query: 923 effective length of database: 10,329,639 effective search space: 9534256797 effective search space used: 9534256797 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)