BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZD03RM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1642                                                         856   0.0  

>3x_Contig1642 
          Length = 16641

 Score =  856 bits (432), Expect = 0.0
 Identities = 485/496 (97%), Gaps = 5/496 (1%)
 Strand = Plus / Minus

                                                                         
Query: 68    cgaactataactattgaaatacataaaactgtatggaacattagaaagcacaaagcaaag 127
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15547 cgaactataact-ttgaaatacataaaactgtatggaacattagaaagcacaaagcaaag 15489

                                                                         
Query: 128   cgtgttgctattcaaatgcctgaagggttgct-catatactctttggtgataagtgatat 186
             |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15488 cgtgttgctattcaaatgcctgaagggttgctgcatatactctttggtgataagtgatat 15429

                                                                         
Query: 187   tttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatggtgcatg 246
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15428 tttggagcagttctgtcagtgtgagattgtggttatgggcgatgtttcttatggtgcatg 15369

                                                                         
Query: 247   ctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccattatgcaca 306
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15368 ctgtattgatgactatacagcaagatcgttggattgtgatttcattgtccattatgcaca 15309

                                                                         
Query: 307   ttcctgcttagttccgatcgatattactactatcaaggtactttacatctttgtcactat 366
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15308 ttcctgcttagttccgatcgatattactactatcaaggtactttacatctttgtcactat 15249

                                                                         
Query: 367   caatattgatgagacacatctaataaagacgttacagaagaacttcccaagaggttcacg 426
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15248 caatattgatgagacacatctaataaagacgttacagaagaacttcccaagaggttcacg 15189

                                                                         
Query: 427   gattgctgcattcggaacaattcagtttaatccaactatccatagtatgaaggacaaatt 486
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15188 gattgctgcattcggaacaattcagtttaatccaactatccatagtatgaaggacaaatt 15129

                                                                         
Query: 487   gttgcagtcggagg-acacatgttatttatcat-cccccttagatcaaa-cacttttcaa 543
             |||||||||||||| ||||||||||| |||||| |||||| |||||||| ||||||  ||
Sbjct: 15128 gttgcagtcggaggaacacatgttatatatcatcccccctcagatcaaaccactttcgaa 15069

                             
Query: 544   aggtgaagtttttggg 559
              ||||||||| |||||
Sbjct: 15068 gggtgaagttcttggg 15053


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7800
Number of Sequences: 1807
Number of extensions: 7800
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)