BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD05FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1173 999 0.0
>3x_Contig1173
Length = 7454
Score = 999 bits (504), Expect = 0.0
Identities = 563/580 (97%), Gaps = 2/580 (0%)
Strand = Plus / Minus
Query: 86 tgatttcttttactggtctggcaagatt-gaagtagacttcggtttaagaaaattttgag 144
||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 4046 tgatttcttttactgttctgtcaagatttgaagtagacttcggtttaagaaaattttgag 3987
Query: 145 ctcatcgcatcttatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 204
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3986 ctcatcgcatctcatcgcatagtttacagtgctagcagcattaagcttggaatgccagta 3927
Query: 205 aaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaattttt 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3926 aaactaccacaattacaacatactatcttgcaatcgtgcagaatcaatgtcacaattttt 3867
Query: 265 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3866 tgaatataaagacactataaaagagggtgatttggtgcttgcatggttgtccagggacaa 3807
Query: 325 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3806 tttgaagccaatcaccgtgaaagctggcgaggttttcaacactcgttatggtgctttctc 3747
Query: 385 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3746 acattcagatatgattggaaaaccatttggttctcaaattgctattagaacgaagggaag 3687
Query: 445 taatagatttggtttcattcacgttctgcagccgaccccggaactatggactatctcttt 504
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3686 taatagatttggtttcattcacgttctgcagccgaccccggaactatggtctatctcttt 3627
Query: 505 acctcacagaacccagattgtttatacaccagattccttctatatcatgcagcggatgga 564
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3626 acctcacagaacccagattgtttatacaccagattcctcctatatcatgcagcggatgga 3567
Query: 565 gtggcatcctagatctagggtcattgaagca-gtacggggtcaggtttcttttctcatgc 623
||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 3566 gtgcaatcctagatctagggtcattgaagcaggtacggggtcaggttccttttctcatgc 3507
Query: 624 ctttgcccgatttgccagacaattattctcatatgagttc 663
|||||| ||| ||| | || ||||||||||||||||||
Sbjct: 3506 gtttgccagatctgcaggtcatttattctcatatgagttc 3467
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,119
Number of Sequences: 1807
Number of extensions: 14119
Number of successful extensions: 174
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)