BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD05RM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1411 1296 0.0
>3x_Contig1411
Length = 7271
Score = 1296 bits (654), Expect = 0.0
Identities = 751/777 (96%), Gaps = 6/777 (0%)
Strand = Plus / Minus
Query: 48 aaactgcatgcttagataacgtcccaatttcctcttcgcctccggggcttttacaatgtc 107
|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2556 aaactgcatgcttagatagcgtcccaatttcctcttcgcctccgtggcttttacaatgtc 2497
Query: 108 tgctttgaaataactataatataaaataataatttaataaactaatgatgttattgtaca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 tgctttgaaataactataatataaaataataatttaataaactaatgatgttattgtaca 2437
Query: 168 tacgatcccccaaaactcagtttaacgataagtatcaagaagaaacactgatccggacag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 tacgatcccccaaaactcagtttaacgataagtatcaagaagaaacactgatccggacag 2377
Query: 228 ttctgtaagccagcctctcaaacgcttggttcacaacagcaactataccctgtacaatta 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 ttctgtaagccagcctctcaaacgcttggttcacaacagcaactataccctgtacaatta 2317
Query: 288 ctgcttgtcgtaggtgtattgtgtcattgtgcttttctcaacatcgattttaaaggttca 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2316 ctgcttgtcgtaggtgtattgtgtcattgtgcttttctcaacatcgattttaaaggttca 2257
Query: 348 aatgtcaaaaaacgtcaaaaagatggcatcttgccttatactagctattactcagataaa 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2256 aatgtcaaaaaacgtcaaaaagatggcatcttgccttatactagctattactcagataaa 2197
Query: 408 cggatgcaagttttagggacaggaaacattaagatcagaagctgaaagtactggtcatgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2196 cggatgcaagttttagggacaggaaacattaagatcagaagctgaaagtactggtcatgg 2137
Query: 468 aattcggacacgatgcaaaacgtgtcagcaaaagatctttgttaggaaactatcttgtga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2136 aattcggacacgatgcaaaacgtgtcagcaaaagatctttgttaggaaactatcttgtga 2077
Query: 528 agaagtacgagaatgtatttgcatcgatagacaatgctgttcctncaggggacaggggaa 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct: 2076 agaagtacgagaatgtatttgcatcgatagacaatgctgttcctccaggggacagggaaa 2017
Query: 588 aagtgctatcgaataaggacttggtgcanggaatagcgacctctttatttgatgctaccc 647
| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 2016 agttgctatcgaataaggacttggtgcaaggaatagcgacctctttatttgatgctacct 1957
Query: 648 tggaaa-gttcaagacgatgagagaagatgattcgaagacaattgacgatgattnntcag 706
||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 1956 gggaaaggttcaagacgatgagagaagatgatacgaagacaattgacgatgattttcaag 1897
Query: 707 agtat-tnaacaacgaaacagatctcgagagt-atgatag-ttctggaaggatgagaatt 763
||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 1896 agtatatcaacaacgaaacagatctcgagagtaatgatagtttctggaaggatgagaatt 1837
Query: 764 ttagaca-gagtttgagatcagatccgtctcttctggaga-gaacgggagaaaccga 818
||||||| |||| |||||||||||||| ||||||| ||| || |||||||||||||
Sbjct: 1836 ttagacaggagtatgagatcagatccgcttcttctgaagaggagcgggagaaaccga 1780
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5911
Number of Sequences: 1807
Number of extensions: 5911
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)