BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD06RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1804 1324 0.0
>3x_Contig1804
Length = 51183
Score = 1324 bits (668), Expect = 0.0
Identities = 744/763 (97%), Gaps = 5/763 (0%)
Strand = Plus / Minus
Query: 51 ccatagttcctgcacgttggagcacaactatatttgtgattggtgatgttttaagtttct 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46667 ccatagttcctgcacgttggagcacaactatatttgtgattggtgatgttttaagtttct 46608
Query: 111 ttgtgcagggtgcaggtgccggtatcatggccaatgctgacacgtcaagtgaatcaaaaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46607 ttgtgcagggtgcaggtgccggtatcatggccaatgctgacacgtcaagtgaatcaaaaa 46548
Query: 171 ctgggtccaacatcatcgttgttggattattcgtgcaggttgcagtcttctgttttttca 230
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 46547 ctgggtccaacatcatcgttgttggattattcgtgcaggttgcagtcttcggttttttca 46488
Query: 231 tgatcacagagctacgtttcttgcttcgagtaaagcgcactagcgctattgttccgtacc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46487 tgatcacagagctacgtttcttgcttcgagtaaagcgcactagcgctattgttccgtacc 46428
Query: 291 tttcacttcactggagaacgctcaacttaacacttctgggcatcagtttactaattctga 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46427 tttcacttcactggagaacgctcaacttaacacttctgggcatcagtttactaattctga 46368
Query: 351 tcaggtctcttgtacgtgccattgaatttattcaaggtaataaaggcttcattatcagtc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46367 tcaggtctcttgtacgtgccattgaatttattcaaggtaataaaggcttcattatcagtc 46308
Query: 411 acgagtacttcttgtacgtgtttgacgcgctaatgatgattcttgcttcattggtatgga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46307 acgagtacttcttgtacgtgtttgacgcgctaatgatgattcttgcttcattggtatgga 46248
Query: 471 tcgttactttcaaatttggagacatatttaagatcatttatgaggtcaaactccttgatt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46247 tcgttactttcaaatttggagacatatttaagatcatttatgaggtcaaactccttgatt 46188
Query: 531 ctttcaaggagaagagtggtgatgatgccagctatatgcanactgaagcttttgataaaa 590
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 46187 ctttcaaggagaagagtggtgatgatgccagctatatgcaaactgaagcttttgataaaa 46128
Query: 591 agtgaacaaaggcccaagtaaagttcgtgtatgtttttgaaatggactttgatattc-ag 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 46127 agtgaacaaaggcccaagtaaagttcgtgtatgtttttgaaatggactttgatatccaag 46068
Query: 650 tatgatattgtgagacgattttttatgta-ttgcagcagataccttagaaacaaattgaa 708
|||||||||||||||||| |||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 46067 tatgatattgtgagacgaatttttatgtagttgcagcagatacataagaaacaaattgaa 46008
Query: 709 t-aatgtcatattactattttctgactaattcttaaa-gattatcccatcccgatatttt 766
| ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||
Sbjct: 46007 taaatgtcatattactattttctgactaattcttaaaggattatccgatcgcgatatttt 45948
Query: 767 gactacc-accttagcagttcaaaattgttccattactgaacc 808
||||||| || | |||||| ||||||||||| |||||||||
Sbjct: 45947 gactaccaacatcagcagtcagaaattgttccagtactgaacc 45905
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7070
Number of Sequences: 1807
Number of extensions: 7070
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)