BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD07FM1.SCF screened BAC_end
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig790 387 e-107
3x_Contig1637 295 9e-80
>3x_Contig790
Length = 4570
Score = 387 bits (195), Expect = e-107
Identities = 249/267 (93%)
Strand = Plus / Minus
Query: 88 ccctctctgatgggtcagatacctgcatggttttatcaaggtacgataggagatccggaa 147
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccctctctgatgggtcagatacgtgcatggttttatcaaggtacgataggagatccggaa 248
Query: 148 atcccgacttcatagataggaggtggatatgttttaattggtcttgctttaattcatgta 207
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 247 atcccgacttcatagataggaggtggatatgttttacttggtcttgctttaattcatgta 188
Query: 208 agacaggtactatttaaatgaacttcaatattgaacggaacgcctctatatctgatccgg 267
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 187 agacaggtactaaataaatgaacttcaatattgaacggaacgcctctatatctgacccgg 128
Query: 268 taggcattctcttggatttcaatgttgcccatggaccactgaatttctgcctgaaataac 327
|||||||||||||| ||||||||||| |||||| |||||| ||||||| ||| | ||||
Sbjct: 127 taggcattctcttgtatttcaatgtttcccatgtaccacttaatttcttccttatttaac 68
Query: 328 ttgatcgtgccgccagtataaacttat 354
|| ||| | || ||| |||||||||||
Sbjct: 67 tttatctttcctccattataaacttat 41
>3x_Contig1637
Length = 14855
Score = 295 bits (149), Expect = 9e-80
Identities = 157/160 (98%)
Strand = Plus / Minus
Query: 351 ttatgagcaggaanttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 410
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14854 ttatgagcaggaatttgcagatcgtcatcaaaagtgaactggaagtcaaaattattaaca 14795
Query: 411 atatcatcattcattaacgatgaaaggtgcgaggcaaaccgttgcttgacatcaactgcc 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 14794 atatcatcattcattaacgatgaaaggtgcgaggcaaacggttgcttgacatcaactgcc 14735
Query: 471 ttagatatatcgtattttagtaaattgttacgaatggaat 510
|||||||||||||||||||||||| |||||||||||||||
Sbjct: 14734 ttagatatatcgtattttagtaaaatgttacgaatggaat 14695
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9766
Number of Sequences: 1807
Number of extensions: 9766
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 2
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)