BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD09FM1.SCF screened BAC_end
(993 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1303 1283 0.0
>3x_Contig1303
Length = 8112
Score = 1283 bits (647), Expect = 0.0
Identities = 691/699 (98%), Gaps = 5/699 (0%)
Strand = Plus / Minus
Query: 86 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1765 ttagccatcaacaaagagtagtgatatagggctgttctttgtttgagctattgaattttc 1706
Query: 146 ctatagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1705 ctatagtgagtgagtgtttcttgttgaaaagaaaaggtgcaagaaatacttccaaacaca 1646
Query: 206 ggttttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaaga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1645 ggttttaagcttgttgtggtttttatttacaagaacgctaatcataatcactttacaaga 1586
Query: 266 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1585 aattcagaaggaatttatcccaattttttcacaggtaaggactgggttttattataatta 1526
Query: 326 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1525 ttattttttttattgacctttgaactttatcttcccttgtaaaggttaatttgccattgc 1466
Query: 386 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1465 ataagttcatctatctatagagcgttttgtctccggagtgctaaaatatcacaatgtcag 1406
Query: 446 ataatgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1405 ataatgggccagatttgtggcttgagaagatcaagaaatgtcaggctttgacggagtctg 1346
Query: 506 agatgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1345 agatgaaacagctatgcgagatgatgaaggaactcttaatggaagaatcgaatattcagc 1286
Query: 566 cggttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1285 cggttcaatcgccggtgactgtttgtggtgatattcacggacaatttcatgaccttttag 1226
Query: 626 aactattcagaactgctggtgggtttcctgatcaagtaaactatattttttcttgttgac 685
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 1225 aactattcagaactgctggtgggtttcctgatcaagtaaactata-tttttcttggtgac 1167
Query: 686 tatgtagatcgtggttattacangtttggagacgttcacactttcttatgtgttttgaaa 745
|||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||
Sbjct: 1166 tatgtagatcgtggttattaca-gtttggagacgttcacac-ttcttatgtg-tttgaaa 1110
Query: 746 gtgaaatatccttccaggattacttttggttagaagaaa 784
||||||||||||||||| ||||| |||||||||| ||||
Sbjct: 1109 gtgaaatatccttccagaattac-tttggttagaggaaa 1072
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9073
Number of Sequences: 1807
Number of extensions: 9073
Number of successful extensions: 80
Number of sequences better than 1.0e-20: 1
length of query: 993
length of database: 10,358,551
effective HSP length: 16
effective length of query: 977
effective length of database: 10,329,639
effective search space: 10092057303
effective search space used: 10092057303
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)