BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZD10RM1.SCF screened BAC_end
         (916 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1030                                                        1423   0.0  

>3x_Contig1030 
          Length = 5200

 Score = 1423 bits (718), Expect = 0.0
 Identities = 738/744 (99%), Gaps = 1/744 (0%)
 Strand = Plus / Minus

                                                                        
Query: 52   ctgatcctgaatcttaatcggctaataaaaatataaacgtatttgtaacaggtgttactg 111
            ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1287 ctgatcctgaatctttatcggctaagaaaaatataaacgtatttgtaacaggtgttactg 1228

                                                                        
Query: 112  gattcttgggatcctacatcctagcagacctcctcaatcgcccgacctcttcctacaata 171
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 gattcttgggatcctacatcctagcagacctcctcaatcgcccgacctcttcctacaata 1168

                                                                        
Query: 172  ttaaggtttttgcccatgtcagagctaaaactgaggctgctggttttaacaggttaaaac 231
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 ttaaggtttttgcccatgtcagagctaaaactgaggctgctggttttaacaggttaaaac 1108

                                                                        
Query: 232  aagctggtataacttatggtacttggtcagattctttcataaatagaattgaggttgtgt 291
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 aagctggtataacttatggtacttggtcagattctttcataaatagaattgaggttgtgt 1048

                                                                        
Query: 292  taggtgacctttctaaggagaagttcggtttgccagaaggcacttggagcaacttggtca 351
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 taggtgacctttctaaggagaagttcggtttgccagaaggcacttggagcaacttggtca 988

                                                                        
Query: 352  acgaaattgacgttatcattcacaacggtgccttggttcattgggtatatccgtactcaa 411
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987  acgaaattgacgttatcattcacaacggtgccttggttcattgggtatatccgtactcaa 928

                                                                        
Query: 412  agctcagagaccctaatgttgttgcaactgtcaatgttatgtctcttgccgcttcaggta 471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  agctcagagaccctaatgttgttgcaactgtcaatgttatgtctcttgccgcttcaggta 868

                                                                        
Query: 472  aggccaaatactttacgtttgtttcctctacttccacaattgataccgaacattactttt 531
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867  aggccaaatactttacgtttgtttcctctacttccacaattgataccgaacattactttt 808

                                                                        
Query: 532  cattatctgataagttagtgtcggagggaaagtctggtatcctagaagctgacgacttat 591
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 807  cattatctgataagttagtgtcggagggaaagtctggtatcctagaagct-acgacttat 749

                                                                        
Query: 592  cangatctgctgtcgggttaactagtggatatggtcaatcttaatgggccgccgaatata 651
            || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 748  caggatctgctgtcgggttaactagtggatatggtcaatctaaatgggccgccgaatata 689

                                                                        
Query: 652  tcataagaagagcgggggagcgtggtcttcgcggctgcattgttagaccangttatgtta 711
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 688  tcataagaagagcgggggagcgtggtcttcgcggctgcattgttagaccaggttatgtta 629

                                                                        
Query: 712  ccggtgcctcatccaatgggtcgtccaatactgatgatttcttgttaagattcttaaagg 771
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  ccggtgcctcatccaatgggtcgtccaatactgatgatttcttgttaagattcttaaagg 569

                                    
Query: 772  gggtggtacagttgggtcaaatcc 795
            ||||||||||||||||||||||||
Sbjct: 568  gggtggtacagttgggtcaaatcc 545


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5128
Number of Sequences: 1807
Number of extensions: 5128
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)