BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD11RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1703 1467 0.0
>3x_Contig1703
Length = 17919
Score = 1467 bits (740), Expect = 0.0
Identities = 838/859 (97%), Gaps = 9/859 (1%)
Strand = Plus / Plus
Query: 46 acgctgttgaggagttaataagacctttatgttattcgtcacattattggaactggcggt 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15332 acgctgttgaggagttaataagacctttatgttattcgtcacattattggaactggcggt 15391
Query: 106 agcttgttgttgctgctgctgttgctgctgctgttgctgctgatccatggatttaacatt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15392 agcttgttgttgctgctgctgttgctgctgctgttgctgctgatccatggatttaacatt 15451
Query: 166 cgtggcattattatttacagctccctgtgctccagcctgcgcttgggcctgctgctgcct 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15452 cgtggcattattatttacagctccctgtgctccagcctgcgcttgggcctgctgctgcct 15511
Query: 226 ctgtttactgtaagcctcgtacaaagccttaatacgggccgcttgtctcaatagctcttt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15512 ctgtttactgtaagcctcgtacaaagccttaatacgggccgcttgtctcaatagctcttt 15571
Query: 286 cccttccttggtatctacaccaattcgcttagcttcgttaactaacgattttagtctatc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15572 cccttccttggtatctacaccaattcgcttagcttcgttaactaacgattttagtctatc 15631
Query: 346 cgccaattgctgcatagaagctggcgtgaggttctgcagctgtacattacctgcttggcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15632 cgccaattgctgcatagaagctggcgtgaggttctgcagctgtacattacctgcttggcc 15691
Query: 406 tgacattgtccgtatcttggttcgtaatccgaaatgcacaccgcaagcccactttaagtg 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15692 tgacattgtccgtatcttggttcgtaatccgaaatgcacaccgcaagcccactttaagtg 15751
Query: 466 tcgaaataccctcgtgctggccttctttgcccccgttttgcccttgctttaacctcgcgg 525
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15752 ttgaaataccctcgtgctggccttctttgcccccgttttgcccttgctttaacctcgcgg 15811
Query: 526 caactactttcgattgttattcacttgttgatctttgaaatatttttgaattttgatgct 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15812 caactactttcgattgttattcacttgttgatctttgaaatatttttgaattttgatgct 15871
Query: 586 gaaaggaataggaagacaagtgttaccctgacaacatacacaatgcgtatatatgaatat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15872 gaaaggaataggaagacaagtgttaccctgacaacatacacaatgcgtatatatgaatat 15931
Query: 646 atgtatctatgaatatgttcataagcgatatangtgtttgcgctgcatcacagcttgtca 705
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 15932 atgtatctatgaatatgttcataagcgatataggtgtttgcgctgcatcacagcttgtca 15991
Query: 706 ttttctttcaagaattccgtatattcgtctattagtagcggccaagcagccatttcatca 765
||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct: 15992 ttttcttccaagaattcgtaatattcgtctataagtagcggccaagcagccatttcatca 16051
Query: 766 tagtttttgttttaaactttcgtcattgggggtattgttcaatggactttatag-acatt 824
||| ||||||||||||||||||||||| |||||||||||||||| || |||||| ||||
Sbjct: 16052 tag-ttttgttttaaactttcgtcatt-ggggtattgttcaatgaac-ttatagaacatc 16108
Query: 825 aaccatatatcgtttgagaagtttctgtttcccttggaatccgagtcgtccaaaattgat 884
||||||||||||||||||| | |||||||| |||||| ||||||||||| || |||||||
Sbjct: 16109 aaccatatatcgtttgagatg-ttctgttt-ccttgg-atccgagtcgt-cagaattgat 16164
Query: 885 ggatttcaagccatgaatt 903
|| |||||||||||||||
Sbjct: 16165 -gaattcaagccatgaatt 16182
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7956
Number of Sequences: 1807
Number of extensions: 7956
Number of successful extensions: 524
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)