BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZD12RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1167 981 0.0
>3x_Contig1167
Length = 4801
Score = 981 bits (495), Expect = 0.0
Identities = 558/571 (97%), Gaps = 6/571 (1%)
Strand = Plus / Minus
Query: 48 atccctcgaagag-aaaacagcatcatgcagaaaagaccgcacaaaagcggttttgaagg 106
||||||||||||| ||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 4765 atccctcgaagaggaaaacagaa-catgcagaaaagaccgcacaaaagcggttttgaagg 4707
Query: 107 ctccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaattt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4706 ctccaaggtgtttcaaatatgactgactgtttttggttcagccaggtggctgcaaaattt 4647
Query: 167 gtaccgtggaggctctctcgtcagttcatttttttatccactttttatcctctaactgct 226
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4646 gtaccgtggaggctctctcgtcagttcatttttttatccactttttatcctcgaactgct 4587
Query: 227 acgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctattt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4586 acgatgttttcaatcgggagatctactacgcgaacgcttgtttatgcgcgtcctctattt 4527
Query: 287 catattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagtagg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4526 catattttttcccatttattaagcgcaatatagcagatattacatagtttcctaagtagg 4467
Query: 347 tctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgtttcga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4466 tctttttccttcgaatgatcggaattgcagtcaacgattcgtaaatttaccttgtttcga 4407
Query: 407 gaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatattta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4406 gaaagtgcgcaatctgaaacacccgtattcaataacaacagaagcattcagttatattta 4347
Query: 467 tgggctcaattagacacttgatat-acacaggaattaggcattgtacgcatttttgaaa- 524
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4346 tgggctcaattagacacttgatataacacaggaattaggcattgtacgcatttttgaaag 4287
Query: 525 taggggagattctagttcgc-gtgtaccgagtagtatttgtcgttttctgtgttccaaag 583
||||||||||||||| |||| ||||||||||||||||| |||||||||||||| | ||
Sbjct: 4286 taggggagattctag-tcgcggtgtaccgagtagtattgtccgttttctgtgttcgagag 4228
Query: 584 tctttgaaattttttttttttttatctttac 614
|||||||||||||||||||||||||||||||
Sbjct: 4227 tctttgaaattttttttttttttatctttac 4197
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 21,933
Number of Sequences: 1807
Number of extensions: 21933
Number of successful extensions: 441
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)