BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE01FM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig888 775 0.0
>3x_Contig888
Length = 2072
Score = 775 bits (391), Expect = 0.0
Identities = 473/491 (96%), Gaps = 7/491 (1%)
Strand = Plus / Plus
Query: 89 tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 tcattcagcgaatcataaacagaagtcattagctccatttcagagcgattcaatccttta 984
Query: 149 atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 atacatgatctagttttgatagtattagcgatgtcgaccaataagaactgatagtcgtta 1044
Query: 209 ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 ctcttatcaattattccaagaacagtaagctctttgattctatacatcaaaaactttttg 1104
Query: 269 aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1105 aactcagcatagttaataatatcaccgtgcttttcagataaagtattagcaatgcttgga 1164
Query: 329 ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1165 ttctgtgcgatgagctgttggaaggcaatttcgtcctctggtagtacttcgctaacgaga 1224
Query: 389 agatccgttaaattggaattgactttcctcaacctgcatcaaataacacaagccctgctt 448
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 1225 agatccgttaaattggaattgac-ttcctcaacctgcatcaaataacacaagccctgctt 1283
Query: 449 tggctcggtatacatcaagtcagaactgggattggttaagagaaactttgtttgtcggaa 508
|| ||||||||||||||||||||| |||| ||| ||| |||| |||||||| || |||||
Sbjct: 1284 tgcctcggtatacatcaagtcagatctggaatt-gtttagagtaactttgtatg-cggaa 1341
Query: 509 ggat-caggcttattggtgagttgccatatgtccgttgacggacctttttgtcgaattta 567
|||| |||||||| ||||||||||| || |||||||||||||| | |||||||||||| |
Sbjct: 1342 ggatccaggctta-tggtgagttgcgat-tgtccgttgacgga-cgttttgtcgaattca 1398
Query: 568 atttggatttt 578
|| || |||||
Sbjct: 1399 atctgaatttt 1409
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8304
Number of Sequences: 1807
Number of extensions: 8304
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)