BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZE01RM1.SCF screened BAC_end (944 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig827 1072 0.0 >3x_Contig827 Length = 2924 Score = 1072 bits (541), Expect = 0.0 Identities = 591/604 (97%), Gaps = 3/604 (0%) Strand = Plus / Minus Query: 55 ccatggatatcaagatctccaatacaaaggaaacaactgaaggcactgaccacttgaaag 114 |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1975 ccatggatatcaag-tatccaatacaaaggaaacaactgaaggcactgaccacttgaaag 1917 Query: 115 actgtgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattcc 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1916 actgtgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattcc 1857 Query: 175 acaaaaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactac 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1856 acaaaaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactac 1797 Query: 235 aatcaattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctc 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1796 aatcaattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctc 1737 Query: 295 actttcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttg 354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1736 actttcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttg 1677 Query: 355 ccgttccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaat 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1676 ccgttccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaat 1617 Query: 415 ggtgacgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaa 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1616 ggtgacgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaa 1557 Query: 475 cgtttctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgat 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1556 cgtttctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgat 1497 Query: 535 atcttncgtctaaactactcggcttatgcctctttgtgtgtgtgtgtgtgagtgtgtcgt 594 ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| || Sbjct: 1496 atcttccgtctaaactactcggcttaggcctctttgtgtgtgtgtgtgtgtgtgtgt-gt 1438 Query: 595 ttg-acatttatacatgttagtattatacaatataaatctttaaatattacgtggaatca 653 ||| |||||||||||||| ||||| ||||||||||||||||||| ||| ||||| |||| Sbjct: 1437 ttgtacatttatacatgtaagtatcatacaatataaatctttaattatcacgtgatatca 1378 Query: 654 aaat 657 |||| Sbjct: 1377 aaat 1374 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6761 Number of Sequences: 1807 Number of extensions: 6761 Number of successful extensions: 179 Number of sequences better than 1.0e-20: 1 length of query: 944 length of database: 10,358,551 effective HSP length: 16 effective length of query: 928 effective length of database: 10,329,639 effective search space: 9585904992 effective search space used: 9585904992 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)