BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZE01RM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig827                                                         1072   0.0  

>3x_Contig827 
          Length = 2924

 Score = 1072 bits (541), Expect = 0.0
 Identities = 591/604 (97%), Gaps = 3/604 (0%)
 Strand = Plus / Minus

                                                                        
Query: 55   ccatggatatcaagatctccaatacaaaggaaacaactgaaggcactgaccacttgaaag 114
            |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 ccatggatatcaag-tatccaatacaaaggaaacaactgaaggcactgaccacttgaaag 1917

                                                                        
Query: 115  actgtgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattcc 174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1916 actgtgtttagtccgttagtttgtctaaattacttcgaccttcaccccaccaagcattcc 1857

                                                                        
Query: 175  acaaaaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactac 234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1856 acaaaaaaaatgtctgttgacttcagctctttggcccaacaattcacagaattctactac 1797

                                                                        
Query: 235  aatcaattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctc 294
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1796 aatcaattcgatagtgacagaacccaattgggtaatctgtacagagagcaatcgatgctc 1737

                                                                        
Query: 295  actttcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttg 354
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1736 actttcgaaactacccagttgcaaggagccaaggatatcgttgagaagctagtctctttg 1677

                                                                        
Query: 355  ccgttccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaat 414
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1676 ccgttccaaaaagtagctcatcgtatcactactttggacgctcaaccggcttctcctaat 1617

                                                                        
Query: 415  ggtgacgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaa 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1616 ggtgacgtcttggtcatgatcaccggtgacttgttgatcgatgaagaacaaaacccacaa 1557

                                                                        
Query: 475  cgtttctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgat 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1556 cgtttctcccaagtgtttcatttgatgccagaaggatcttcatactacgtgtacaacgat 1497

                                                                        
Query: 535  atcttncgtctaaactactcggcttatgcctctttgtgtgtgtgtgtgtgagtgtgtcgt 594
            ||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||| ||
Sbjct: 1496 atcttccgtctaaactactcggcttaggcctctttgtgtgtgtgtgtgtgtgtgtgt-gt 1438

                                                                        
Query: 595  ttg-acatttatacatgttagtattatacaatataaatctttaaatattacgtggaatca 653
            ||| |||||||||||||| ||||| ||||||||||||||||||| ||| |||||  ||||
Sbjct: 1437 ttgtacatttatacatgtaagtatcatacaatataaatctttaattatcacgtgatatca 1378

                
Query: 654  aaat 657
            ||||
Sbjct: 1377 aaat 1374


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6761
Number of Sequences: 1807
Number of extensions: 6761
Number of successful extensions: 179
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)