BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE02FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 860 0.0
>3x_Contig846
Length = 2695
Score = 860 bits (434), Expect = 0.0
Identities = 562/590 (95%), Gaps = 11/590 (1%)
Strand = Plus / Minus
Query: 87 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2389 tacccaagtattttcgacggaaatacgatttctgttattataagagtcatcagcgcatag 2330
Query: 147 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2329 aacacacatcagccggaattagagatgctacgtgcatgtggttgggtatatacgtgcgaa 2270
Query: 207 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2269 cggcgggaataactacgccagtatgtccgtttcccatggaaaagttaaaagcagttagat 2210
Query: 267 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2209 tcatcgaaaacgcaatagaggctactaatgcccctcgctattgccaaacgaccttaatgg 2150
Query: 327 tcaaacattaggttagggttccagttattctttctgcctgttattgttcaaatttgac-a 385
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 2149 tcaaacattaggttagggttccagttattctttctgcctgttattgttcaaa-ttgacaa 2091
Query: 386 atcacagggagcttgtttagcacatttgtatttccattccttttgctcaagtgtcacctt 445
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 2090 atcacagggagcttgtttagcacatttgtatttccattccttttgctcaggtgtcacctt 2031
Query: 446 cgagcaaatt-ctgtattactaagtaaatatatgtaattaataatgtattacgaaagag- 503
|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 2030 cgagcaaattcctgtattactaagtaaatatatgtaa-taataatgtattacgaaagaga 1972
Query: 504 aaaaaagaaaccggatgaaaaggatggatttttttttagcagnccatttcatcggtttga 563
||||||||||||||||| |||||||||| ||||||||||||| ||||| |||| | ||||
Sbjct: 1971 aaaaaagaaaccggatggaaaggatgga-ttttttttagcag-ccattccatc-gcttga 1915
Query: 564 aagcaactgttccctaaggaaattacttagcttcacatttgccatcctaattcttgacta 623
||||| ||| |||||| ||||||||| ||| ||||| |||| |||||||||||||||||
Sbjct: 1914 aagcagctg-tccctacagaaattactaagc-tcacaattgcaatcctaattcttgacta 1857
Query: 624 ttgatttgaaaaaaccttgtcccccttctgtaattttgggccaattccca 673
||||||||||| | ||| || ||||| ||||||||| || |||||||||
Sbjct: 1856 ttgatttgaaatagcctcgt-cccctcctgtaatttcggcacaattccca 1808
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7740
Number of Sequences: 1807
Number of extensions: 7740
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)