BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE03FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1678 936 0.0
>3x_Contig1678
Length = 12472
Score = 936 bits (472), Expect = 0.0
Identities = 610/640 (95%), Gaps = 12/640 (1%)
Strand = Plus / Minus
Query: 86 catagaatttgcgcgaagataaagcgcaagtaaggatatattctatcagattactttcat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1918 catagaatttgcgcgaagataaagcgcaagtaaggatatattctatcagattactttcat 1859
Query: 146 gaaacattgagtacaacccaagcttttatactggtatgagatagatagaactatagaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1858 gaaacattgagtacaacccaagcttttatactggtatgagatagatagaactatagaata 1799
Query: 206 tctgaaagtaacatagtaggtgattatgggattcaaagcttattcgaacctttgtaaatg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1798 tctgaaagtaacatagtaggtgattatgggattcaaagcttattcgaacctttgtaaatg 1739
Query: 266 tcataggataaagatgaaagcttccttcttacaatggtaccgttattc-aaaaggttctc 324
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1738 tcataggataaagatgaaagcttccttcttacaatggtaccgttattcaaaaaggttctc 1679
Query: 325 acgatagctgcatattctttactatcatgttgaatgttatcaaaagcatttaagagggca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 acgatagctgcatattctttactatcatgttgaatgttatcaaaagcatttaagagggca 1619
Query: 385 ggtgtattgatttccagttcaacttcgtacgttgtatcagattncagggttcttttcatt 444
||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct: 1618 ggtgtattgatttccagttcaacttcgtacgttgtatcagatt-caggttctttttcatt 1560
Query: 445 tttggttattgactctaataggtttattttccaccctagtgatatcaaatctggtacaag 504
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 ttt-gttattgactctaataggtttattttccaccctagtgatatcaaatctggtacaag 1501
Query: 505 agtcattatggatgttactggtacgtttcttt-aacgatgacctgtttggagtattggtt 563
||||||||||||||| |||||||||||||||| |||||||||||| |||||||| |||||
Sbjct: 1500 agtcattatggatgtaactggtacgtttctttaaacgatgacctg-ttggagta-tggtt 1443
Query: 564 cttgtacttttcaaggtggatcattttcgggtaccggcagttccaaactgatggaaatcc 623
|||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct: 1442 cttgtacttttc-aggtggatcattttcgggtacaggcagttccaaactgattgaaatct 1384
Query: 624 tgggattcat-actatcctttggggaagtacaattaaaactgggaaaattttccgttttt 682
||| | |||| |||||||||||||| |||||||| ||| ||| | |||||||||||||||
Sbjct: 1383 tggta-tcataactatcctttgggg-agtacaataaaatctgtg-aaattttccgttttt 1327
Query: 683 aaataaaatggggcaaatcttcccgggttaacatttcttg 722
||| |||| | |||| |||||| | |||||||| |||||
Sbjct: 1326 caat-aaattgtgcaattcttccggtgttaacatctcttg 1288
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8863
Number of Sequences: 1807
Number of extensions: 8863
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)