BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE03RM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1791 1631 0.0
>3x_Contig1791
Length = 39945
Score = 1631 bits (823), Expect = 0.0
Identities = 893/909 (98%), Gaps = 6/909 (0%)
Strand = Plus / Plus
Query: 49 gattggttcaaacacaaaacgaaaaagaaatgaatggtattagtgcgcttgagcaatgtt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3274 gattggttcaaacacaaaacgaaaaagaaatgaatggtattagtgcgcttgagcaatgtt 3333
Query: 109 taagcctagaccccactaatcagcaggcactcatgacaatttctatcagttatattaatg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3334 taagcctagaccccactaatcagcaggcactcatgacaatttctatcagttatattaatg 3393
Query: 169 agggatatgatctgaccgctttcagcatgctcaacagatggctagatagtaagtaccctg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3394 agggatatgatctgaccgctttcagcatgctcaacagatggctagatagtaagtaccctg 3453
Query: 229 agttaacacgctcccctaccattgatgaggccaatatcgataggtttaatttgagcaaac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3454 agttaacacgctcccctaccattgatgaggccaatatcgataggtttaatttgagcaaac 3513
Query: 289 aagtaatcacgaagtatttgcaagtagctaacgccttgcctcaggtggatccagaagttc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3514 aagtaatcacgaagtatttgcaagtagctaacgccttgcctcaggtggatccagaagttc 3573
Query: 349 agctcggtttgggaacgcttttctatgccaatgaagagtttggtaagacaattgactgtt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 agctcggtttgggaacgcttttctatgccaatgaagagtttggtaagacaattgactgtt 3633
Query: 409 tccgcaccgcattagaagtcaatccaaatgacgaattaatgtggaaccgtttgggagcct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 tccgcaccgcattagaagtcaatccaaatgacgaattaatgtggaaccgtttgggagcct 3693
Query: 469 ctttggccaattcaaaccgtagcgaagaagctatccaggcataccacaaggcccttgcct 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3694 ctttggccaattcaaaccgtagcgaagaagctatccaggcataccacaaggcccttgcct 3753
Query: 529 tgaaaccgtcttttgtgagagctcgttataacttggccatttcgtcaatgaatattggct 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3754 tgaaaccgtcttttgtgagagctcgttataacttggccatttcgtcaatgaatattggct 3813
Query: 589 gttataaagaggctgcagagtctctgctctctgctctatctatgcatgaagtagagaatg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3814 gttataaagaggctgcagagtctctgctctctgctctatctatgcatgaagtagagaatg 3873
Query: 649 ttccaattactggatcagtcgtgcaatctaacaatattctggagaccttaaagcgttcct 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3874 ttccaattactggatcagtcgtgcaatctaacaatattctggagaccttaaagcgttcct 3933
Query: 709 ttgtcgccatggataggagagatntgctagaaaaagtcatgccggggcatggatctacag 768
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 3934 ttgtcgccatggataggagagatttgctagaaaaagtcatgcc-gggcatggatctacag 3992
Query: 769 caatttcgtaatgagttttaactcctgataatgcaacgcagcgaatagtctttgtttgat 828
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 3993 caatttcgtaatgag-tttaacttctgataatgcaacgcagcgaatagtctttgtttgat 4051
Query: 829 aggaccatcctcatattcataatgaattgatcttncacccaagttttgcggaaaaaatac 888
|||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||
Sbjct: 4052 aggaccatcctcatattcataatgaattgatctttca-ccaagttttgcgg-aaaaatac 4109
Query: 889 attcccataattaatttacaggcatttagtcgcatatttgtagccgccaattcgatggaa 948
|||| ||||||||| ||||| |||||||||||||||| ||||| || | ||||||| | |
Sbjct: 4110 attcgcataattaa-ttacaagcatttagtcgcatatatgtagtcgtc-attcgattgta 4167
Query: 949 ttcctcaac 957
|||||||||
Sbjct: 4168 ttcctcaac 4176
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5475
Number of Sequences: 1807
Number of extensions: 5475
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)