BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZE05FM1.SCF screened BAC_end
         (880 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig775                                                         1096   0.0  

>3x_Contig775 
          Length = 2633

 Score = 1096 bits (553), Expect = 0.0
 Identities = 638/654 (97%), Gaps = 10/654 (1%)
 Strand = Plus / Plus

                                                                        
Query: 86   agttgtctaggcaaacgcaataaagcactgttcaatacagtttcataaactgtcaacgtc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814  agttgtctaggcaaacgcaataaagcactgttcaatacagtttcataaactgtcaacgtc 873

                                                                        
Query: 146  ggtaacaagtagtcctcttggtcgacaaatccgataatcttagaatatttatccttatcg 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874  ggtaacaagtagtcctcttggtcgacaaatccgataatcttagaatatttatccttatcg 933

                                                                        
Query: 206  atatctacaccgttaacctttattgagccggtaactttaccagttttgttcttcatggca 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934  atatctacaccgttaacctttattgagccggtaactttaccagttttgttcttcatggca 993

                                                                        
Query: 266  aggatatcaagcaaagtagttttaccagcgcctgaaccgcccataatggctaacatctca 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994  aggatatcaagcaaagtagttttaccagcgcctgaaccgcccataatggctaacatctca 1053

                                                                        
Query: 326  ccaggtttaacagatcctgtgacttcattcaatacgtcagcagtcacattcttagcagga 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1054 ccaggtttaacagatcctgtgacttcattcaatacgtcagcagtcacattcttagcagga 1113

                                                                        
Query: 386  gacacctcataagtgatattttcaaaagtcaaagttgcacttgaatttgttttgaaaagg 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1114 gacacctcataagtgatattttcaaaagtcaaagttgcacttgaatttgttttgaaaagg 1173

                                                                        
Query: 446  tcaaaatcatcctcatcgtcaccatcagatagcttaattgggccattggaaaatataggg 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1174 tcaaaatcatcctcatcgtcaccatcagatagcttaattgggccattggaaaatataggg 1233

                                                                        
Query: 506  cttttagaaatgaagtagatggcaatagacgcgacagcanatatcccccacag-actcan 564
            ||||||||||||||||||||||||||||||||||||||| |||| |||||||| ||||| 
Sbjct: 1234 cttttagaaatgaagtagatggcaatagacgcgacagcaaatat-ccccacagaactcaa 1292

                                                                        
Query: 565  aacaagaactagaatggatgacgttgancaacggtctttatctggaattttgtagcccgg 624
            |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 1293 aacaagaactagaatggatgacgttgacaaacggtctttatctggaattttgtagcccgg 1352

                                                                        
Query: 625  aatctcactgttatgaacaca-tcaccaga-tcacatttc-acgtaatgtaaggatcttc 681
            ||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||| |
Sbjct: 1353 aatctcactgtaatgaacacattcaccagattcacatttcaacgtaatgtaaggatctcc 1412

                                                                  
Query: 682  -aatacagttagga-taaatcattc-tgcta-gttccgaaaa-ttacatttttt 730
             ||||||||||||| |||||||||| ||||| |||||||||| |||||||||||
Sbjct: 1413 aaatacagttaggattaaatcattcatgctaggttccgaaaatttacatttttt 1466


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6152
Number of Sequences: 1807
Number of extensions: 6152
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 880
length of database: 10,358,551
effective HSP length: 16
effective length of query: 864
effective length of database: 10,329,639
effective search space: 8924808096
effective search space used: 8924808096
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)