BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE05RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1753 1552 0.0
>3x_Contig1753
Length = 23959
Score = 1552 bits (783), Expect = 0.0
Identities = 844/857 (98%), Gaps = 6/857 (0%)
Strand = Plus / Minus
Query: 55 atcacgatgggaaagacaataatatctgatatgatagagtcggttgggacacaaagtgct 114
|||| ||||||||||||||||| | |||||||||||||||| ||||||||||||||||||
Sbjct: 2296 atcaagatgggaaagacaataa-agctgatatgatagagtcagttgggacacaaagtgct 2238
Query: 115 gctgaagagcctaaccagaccatatattctagtcctgaatccgatggttcggaagaagaa 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 gctgaagagcctaaccagaccatatattctagtcctgaatccgatggttcggaagaagaa 2178
Query: 175 agagaagaagctgtcaaggagatcgcagtacgacaggctgatagttctgttgatttaagg 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 agagaagaagctgtcaaggagatcgcagtacgacaggctgatagttctgttgatttaagg 2118
Query: 235 cagcagtctcaagaaactggcaatgtcgggaagataatccgggaagaagatgaaaatggt 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 cagcagtctcaagaaactggcaatgtcgggaagataatccgggaagaagatgaaaatggt 2058
Query: 295 tctattacggattctgatacttcccttgagtggcagccaatgactactgttgcctccttt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 tctattacggattctgatacttcccttgagtggcagccaatgactactgttgcctccttt 1998
Query: 355 gatgtatatgatgagaatggagagcttgtgttagaaggcatgaatagaacaggaagtact 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 gatgtatatgatgagaatggagagcttgtgttagaaggcatgaatagaacaggaagtact 1938
Query: 415 ctgtcgttaaatgaacatagtacaccttctcaaaatcaaaagagcactttcgggtatacc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1937 ctgtcgttaaatgaacatagtacaccttctcaaaatcaaaagagcactttcgggtatacc 1878
Query: 475 aaggttgatggtgaggagcaagcacagagatcgtacctcactaacaaaaggaccgatttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 aaggttgatggtgaggagcaagcacagagatcgtacctcactaacaaaaggaccgatttt 1818
Query: 535 ttgttcaaccataagaagctagcggtatctagtgcatctctttctatgtcacttagtaga 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1817 ttgttcaaccataagaagctagcggtatctagtgcatctctttctatgtcacttagtaga 1758
Query: 595 acatctggtacaccggattcccagttcctgtcagaagatgatgaagaagaggaagcaata 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1757 acatctggtacaccggattcccagttcctgtcagaagatgatgaagaagaggaagcaata 1698
Query: 655 agctctaaaaatattacaacaacggatcaattatcgattacgaaagatcttttaaatgat 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1697 agctctaaaaatattacaacaacggatcaattatcgattacgaaagatcttttaaatgat 1638
Query: 715 aaagaanagtttgcatatattgcatgtattactgtgctagttaacgagatgtgtactcgt 774
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1637 aaagaaaagtttgcatatattgcatgtattactgtgctagttaacgagatgtgtactcgt 1578
Query: 775 ttgggtttcaatagcattatcatcgcataatatgaacttcc-aacagaaatttgcgaaac 833
|| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 1577 tt-ggtttcaatagcattatcatcgcataatatg-acttccaaacagaaatttgcgaaac 1520
Query: 834 gggtgcaaagtctacagaangatatggggcattggnaggagctt-atattaaatcgactt 892
|| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct: 1519 ggttgcaaagtctacagaagaatatggggcattgg-aggagcttaatattaaatcgactt 1461
Query: 893 tacgctcatttggaaat 909
|||||||||||||||||
Sbjct: 1460 tacgctcatttggaaat 1444
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7016
Number of Sequences: 1807
Number of extensions: 7016
Number of successful extensions: 102
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)