BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE06FM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1528 771 0.0
>3x_Contig1528
Length = 10737
Score = 771 bits (389), Expect = 0.0
Identities = 424/436 (97%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 87 caggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 caggtagtcatttgttgctactggtacgaggccatgttctctagctttctgtttaattgt 2058
Query: 147 ttctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 ttctgttgagattattggagctggcgcgatcaattgagtagattttttaacaagttgaga 1998
Query: 207 atgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 atgttcagcttcagttaaaactattaagccatacttcttcgcactctcacgaatagaatc 1938
Query: 267 tggtgttaacctctctgaagtgataagtttctccatctctataaattnctcagttggcac 326
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1937 tggtgttaacctctctgaagtgataagtttctccatctctataaattcctcagttggcac 1878
Query: 327 cacagataatccgaattgcngtgcagcagagtaaatgatatcctttgtcaaatcttcagg 386
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1877 cacagataatccgaattgcggtgcagcagagtaaatgatatcctttgtcaaatcttcagg 1818
Query: 387 tgtcaatgatgtagagtaatgattttgatgancatcgatatccttttcaatanggntgta 446
||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct: 1817 tgtcaatgatgtagagtaatgattttgatgacaatcgatatccttttcaataaggttgta 1758
Query: 447 accctaaaacttctgcatgtcttttgcagtcctccaatgttcgttcattatcttttatcg 506
| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1757 a-cctaaaacttctgcatgtctttgcaagtcctccaatgtcggttcattatcttttatcg 1699
Query: 507 ttgatgccagtgaaac 522
||||||||||||||||
Sbjct: 1698 ttgatgccagtgaaac 1683
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,471
Number of Sequences: 1807
Number of extensions: 26471
Number of successful extensions: 2712
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)