BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZE06RM1.SCF screened BAC_end (973 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1589 1128 0.0 >3x_Contig1589 Length = 10239 Score = 1128 bits (569), Expect = 0.0 Identities = 671/695 (96%), Gaps = 8/695 (1%) Strand = Plus / Plus Query: 51 gagcgtgcacctgagagatcttcacaggaccggggcaagtcttctataggaaaaagcttt 110 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 3574 gagcgtgcacctgagagagcttcacaggaccggggcaagtcttctataggaaaaagcttt 3633 Query: 111 ttccagcgatgtaacattcagtatttacgttagaactatataaaggtagaaagtgttttt 170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3634 ttccagcgatgtaacattcagtatttacgttagaactatataaaggtagaaagtgttttt 3693 Query: 171 gtgtgttactgcatcgataagtttttaatggtaggatagtttgttctatctaaaggcagc 230 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 3694 gtgtgttactgcatcgataagtttttaatggtaggatagtttgttctagctaaaggcagc 3753 Query: 231 atcaatcacattgacaacgcaaacgcaatgtctttatcatatgtgaccaatccatttggt 290 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3754 atcaatcacattgacaacgcaaacgcaatgtctttatcatatgtgaccaatccatttggt 3813 Query: 291 cttccaactgagagcacttcagttgccaactttcacaacaccagtgaatgcaattaactc 350 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 3814 cttccaactgagagcac-tcagttgccaactttcacaacaccagtgaatgcaattaactc 3872 Query: 351 tgtgttgttcagaaatctgaagagtattttcagttacaaaacattctcagaccctgattt 410 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3873 tgtgttgttcagaaatctgaagagtattttcagttacaaaacattctcagaccctgattt 3932 Query: 411 attggatgcttctatcaaaaagttagctgaaagagagaacggtttgttctttaaggaatt 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3933 attggatgcttctatcaaaaagttagctgaaagagagaacggtttgttctttaaggaatt 3992 Query: 471 ggacgtaagatcaggtgcaggcttgacttacttt-ggttttgctanaggttcttccgacc 529 ||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| Sbjct: 3993 ggacgtaagatcaggtgcaggcttgac-tactttgggttttgctaagggttcttccgacc 4051 Query: 530 ttgctggtattatcactccaggttatgctttgcctttattcgtcagcagtttcaaac-ag 588 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || Sbjct: 4052 ttgctggtattatcactccaggttatgctttgccttatttcgtcagcagtttcaaacaag 4111 Query: 589 aaatcgaca-ccagtcgaaa-tcgtctttagcggtgnttcgttggattatgatgaagctt 646 ||||||||| |||||||||| |||||||||||| || |||||||||||||||||| |||| Sbjct: 4112 aaatcgacacccagtcgaaattcgtctttagcgttggttcgttggattatgatgaggctt 4171 Query: 647 ctggttctat-atcaacgataatttgactccttttgaaactgcaaagaatttgggtttcc 705 |||||||||| ||||||||| ||||||||||||| || |||||||| ||||||| |||| Sbjct: 4172 ctggttctataatcaacgattatttgactcctttgaaagctgcaaaggatttggggttcc 4231 Query: 706 ctgtgcattacaccattgcaaatttccgaagttaa 740 |||| |||||||||||||||||| ||||||||||| Sbjct: 4232 ctgt-cattacaccattgcaaatctccgaagttaa 4265 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8273 Number of Sequences: 1807 Number of extensions: 8273 Number of successful extensions: 60 Number of sequences better than 1.0e-20: 1 length of query: 973 length of database: 10,358,551 effective HSP length: 16 effective length of query: 957 effective length of database: 10,329,639 effective search space: 9885464523 effective search space used: 9885464523 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)