BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZE06RM1.SCF screened BAC_end
         (973 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1589                                                        1128   0.0  

>3x_Contig1589 
          Length = 10239

 Score = 1128 bits (569), Expect = 0.0
 Identities = 671/695 (96%), Gaps = 8/695 (1%)
 Strand = Plus / Plus

                                                                        
Query: 51   gagcgtgcacctgagagatcttcacaggaccggggcaagtcttctataggaaaaagcttt 110
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3574 gagcgtgcacctgagagagcttcacaggaccggggcaagtcttctataggaaaaagcttt 3633

                                                                        
Query: 111  ttccagcgatgtaacattcagtatttacgttagaactatataaaggtagaaagtgttttt 170
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3634 ttccagcgatgtaacattcagtatttacgttagaactatataaaggtagaaagtgttttt 3693

                                                                        
Query: 171  gtgtgttactgcatcgataagtttttaatggtaggatagtttgttctatctaaaggcagc 230
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3694 gtgtgttactgcatcgataagtttttaatggtaggatagtttgttctagctaaaggcagc 3753

                                                                        
Query: 231  atcaatcacattgacaacgcaaacgcaatgtctttatcatatgtgaccaatccatttggt 290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3754 atcaatcacattgacaacgcaaacgcaatgtctttatcatatgtgaccaatccatttggt 3813

                                                                        
Query: 291  cttccaactgagagcacttcagttgccaactttcacaacaccagtgaatgcaattaactc 350
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3814 cttccaactgagagcac-tcagttgccaactttcacaacaccagtgaatgcaattaactc 3872

                                                                        
Query: 351  tgtgttgttcagaaatctgaagagtattttcagttacaaaacattctcagaccctgattt 410
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3873 tgtgttgttcagaaatctgaagagtattttcagttacaaaacattctcagaccctgattt 3932

                                                                        
Query: 411  attggatgcttctatcaaaaagttagctgaaagagagaacggtttgttctttaaggaatt 470
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3933 attggatgcttctatcaaaaagttagctgaaagagagaacggtttgttctttaaggaatt 3992

                                                                        
Query: 471  ggacgtaagatcaggtgcaggcttgacttacttt-ggttttgctanaggttcttccgacc 529
            ||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||||||
Sbjct: 3993 ggacgtaagatcaggtgcaggcttgac-tactttgggttttgctaagggttcttccgacc 4051

                                                                        
Query: 530  ttgctggtattatcactccaggttatgctttgcctttattcgtcagcagtttcaaac-ag 588
            ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||
Sbjct: 4052 ttgctggtattatcactccaggttatgctttgccttatttcgtcagcagtttcaaacaag 4111

                                                                        
Query: 589  aaatcgaca-ccagtcgaaa-tcgtctttagcggtgnttcgttggattatgatgaagctt 646
            ||||||||| |||||||||| |||||||||||| || |||||||||||||||||| ||||
Sbjct: 4112 aaatcgacacccagtcgaaattcgtctttagcgttggttcgttggattatgatgaggctt 4171

                                                                        
Query: 647  ctggttctat-atcaacgataatttgactccttttgaaactgcaaagaatttgggtttcc 705
            |||||||||| ||||||||| |||||||||||||  || |||||||| ||||||| ||||
Sbjct: 4172 ctggttctataatcaacgattatttgactcctttgaaagctgcaaaggatttggggttcc 4231

                                               
Query: 706  ctgtgcattacaccattgcaaatttccgaagttaa 740
            |||| |||||||||||||||||| |||||||||||
Sbjct: 4232 ctgt-cattacaccattgcaaatctccgaagttaa 4265


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8273
Number of Sequences: 1807
Number of extensions: 8273
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)