BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE09FM1.SCF screened BAC_end
(972 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1414 1086 0.0
>3x_Contig1414
Length = 7923
Score = 1086 bits (548), Expect = 0.0
Identities = 640/659 (97%), Gaps = 10/659 (1%)
Strand = Plus / Plus
Query: 92 caaagacttcaatgattcacaagtggacttgagagattcaaagaaatctactggcatgta 151
|||||||||||||||| || |||||| ||||||||||||| |||||||||||||||||||
Sbjct: 1529 caaagacttcaatgat-cagaagtgg-cttgagagattcagagaaatctactggcatgta 1586
Query: 152 tggctggttcttgaaggatccagaaactcatagctacacgctagaaccagaactgttaga 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 tggctggttcttgaaggatccagaaactcatagctacacgctagaaccagaactgttaga 1646
Query: 212 atatctggcacaatatattaaagaaaacggtccctttgatggaattggtggattcagtca 271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 atatctggcacaatatattaaagaaaacggtccctttgatggaattggtggattcagtca 1706
Query: 272 aggtgctggactagcagggtatctatccactgatttatggtccattctgccgctaaacaa 331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1707 aggtgctggactagcagggtatctatccactgatttatggtccattctgccgctaaacaa 1766
Query: 332 ggaggaacaaccgcctttcaaattcgctatgtacttctccggtttcaaattcgaaccaga 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1767 ggaggaacaaccgcctttcaaattcgctatgtacttctccggtttcaaattcgaaccaga 1826
Query: 392 acagttccaagctccgtacgagacacatccaatccaattaaaaactctacatattgtggg 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1827 acagttccaagctccgtacgagacacatccaatccaattaaaaactctacatattgtggg 1886
Query: 452 ggaactagattccctcgttactgaagaaaggtcaatgaagttgttcgaagcgtgtgatcc 511
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1887 ggaactagattccctcgttactgaagaaaggtcaatgaagttgttcgaagcgtgtgatcc 1946
Query: 512 ttcaacacgcactatggtaaagcattccggtggtcactacattcctaatactaaaccgtt 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1947 ttcaacacgcactatggtaaagcattccggtggtcactacattcctaatactaaaccgtt 2006
Query: 572 tatcaatatgattttgagttggctgcatgcacaagcagatgaaaa-ttaagggaactttc 630
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2007 tatcaatatgattttgagttggctgcatgcacaagcagatgaaaatttaagggaactttc 2066
Query: 631 -ggttctgaag-atctgctatgaaaacca-cggtaacaacttcgatccacatttggacga 687
|||||||||| |||||||||||||| || || |||||||| ||||||||| ||||||||
Sbjct: 2067 gggttctgaagaatctgctatgaaaaacaccgttaacaactccgatccacaattggacga 2126
Query: 688 tgatttatttagatttgattgactctttccgggtaaaatctaaggccaaattctttgcc 746
||||||| |||||| |||||||||||||| ||||| |||| ||||| |||||||||||
Sbjct: 2127 tgattta-ttagatatgattgactctttc--ggtaagatct-aggcccaattctttgcc 2181
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,780
Number of Sequences: 1807
Number of extensions: 14780
Number of successful extensions: 1564
Number of sequences better than 1.0e-20: 1
length of query: 972
length of database: 10,358,551
effective HSP length: 16
effective length of query: 956
effective length of database: 10,329,639
effective search space: 9875134884
effective search space used: 9875134884
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)