BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE09RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig724 1243 0.0
>3x_Contig724
Length = 2144
Score = 1243 bits (627), Expect = 0.0
Identities = 662/671 (98%), Gaps = 2/671 (0%)
Strand = Plus / Minus
Query: 94 cccctgcctttaaaagatatggcctcgtttcatggatgggctgaccacaattaatcggta 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cccctgcctttaaaagatatggcctcgtttcatggatgggctgaccacaattaatcggta 620
Query: 154 atcgttgacgattgacaaatttcttcaaccccgattgaacatgaaagttccggcatataa 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 atcgttgacgattgacaaatttcttcaaccccgattgaacatgaaagttccggcatataa 560
Query: 214 ttgaagtcaaaatattattcttgaacattatccaacagtgccatttaatcacttgatatg 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ttgaagtcaaaatattattcttgaacattatccaacagtgccatttaatcacttgatatg 500
Query: 274 caaaattccagctatttagctattgatatttggataaggttccagggagagtatataatt 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaaattccagctatttagctattgatatttggataaggttccagggagagtatataatt 440
Query: 334 cagtggttttcattacgagcctacataataagtaccttcaaacaatttcatcttattcca 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cagtggttttcattacgagcctacataataagtaccttcaaacaatttcatcttattcca 380
Query: 394 caccgaatttttcagtttttttttttttgttttcagagcattttataatggcgtcagttc 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caccgaatttttcagtttttttttttttgttttcagagcattttataatggcgtcagttc 320
Query: 454 ggacagagagatgaatgtgctgaaagaacgtcattcattcaaagtccatgtattaagaca 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggacagagagatgaatgtgctgaaagaacgtcattcattcaaagtccatgtattaagaca 260
Query: 514 ataagcatacgcgattaccaagcgcttttcaatgtctttttagaaacgctgattcttctc 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ataagcatacgcgattaccaagcgcttttcaatgtctttttagaaacgctgattcttctc 200
Query: 574 actttatctgcatggcagtttttgcgtgtcaagaatagacttttctggagaaatgtagtc 633
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 199 actttatctgcatggcag-ttttgcgtgtcaagataagacttttctggagaaatgtagtc 141
Query: 634 attctcattgtcactatggaccccttttctttgattttccctggtagcccatactattag 693
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct: 140 attctcattgtcactatgga-cccttttctttgatttcccctggtagcccatactattag 82
Query: 694 taggatcattaatactcaattcgggtaatgttaaggagtcatcaaccgaaagttttttca 753
||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 81 tagtatcattaatactcaattcgtgtaatgttaaggagtcatcaacagaaagttttttca 22
Query: 754 attttttaaaa 764
| |||||||||
Sbjct: 21 agtttttaaaa 11
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,107
Number of Sequences: 1807
Number of extensions: 15107
Number of successful extensions: 291
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)