BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZE10FM1.SCF screened BAC_end
         (914 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1684                                                         967   0.0  

>3x_Contig1684 
          Length = 14609

 Score =  967 bits (488), Expect = 0.0
 Identities = 584/607 (96%), Gaps = 7/607 (1%)
 Strand = Plus / Plus

                                                                         
Query: 86    acccaccattgaggccttttgtatcaactcctgtcattgctattacaaagatctttaacc 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9656  acccaccattgaggccttttgtatcaactcctgtcattgctattacaaagatctttaacc 9715

                                                                         
Query: 146   aagggagcagacgcaaatatgagttgttactgttaccctcatagcgctcacgtcaagatt 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9716  aagggagcagacgcaaatatgagttgttactgttaccctcatagcgctcacgtcaagatt 9775

                                                                         
Query: 206   cgcgttttaatatgcataatgtcaatatagatcttaaacgtaaacaacatacatcacatc 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9776  cgcgttttaatatgcataatgtcaatatagatcttaaacgtaaacaacatacatcacatc 9835

                                                                         
Query: 266   gcataacacaggcaatagtacgctccccatctggtatcaaagcatttacttcagtggaaa 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9836  gcataacacaggcaatagtacgctccccatctggtatcaaagcatttacttcagtggaaa 9895

                                                                         
Query: 326   agagcgacaaagtacaaataaatgaatcattatgtcaataaacctttcaaacgtccacgc 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9896  agagcgacaaagtacaaataaatgaatcattatgtcaataaacctttcaaacgtccacgc 9955

                                                                         
Query: 386   atggtangtagacctggaagagataccctttctgagcagatacacaccggccttcggcca 445
             |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9956  atggtaggtagacctggaagagataccctttctgagcagatacacaccggccttcggcca 10015

                                                                         
Query: 446   aagtctcatcattcacatactaaaattaccaataccagctctgaaactgtgaaactaacg 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10016 aagtctcatcattcacatactaaaattaccaataccagctctgaaactgtgaaactaacg 10075

                                                                         
Query: 506   tatgccggccc-aaaagtttgaaaaccagcgtaaatgcaccagttggtgtgtctaagtca 564
             ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10076 tatgccggcccaaaaagtttgaaaaccagcgtaaatgcaccagttggtgtgtctaagtca 10135

                                                                         
Query: 565   tcacaaggggttttctttattttacag-aaattacagagaggtttcacat-agaagaacc 622
             |||| ||| | |||||||| ||||||| ||||||||||  |||| || || |||||||| 
Sbjct: 10136 tcac-aggaggtttcttta-tttacagcaaattacagaagggttacaaataagaagaaca 10193

                                                                         
Query: 623   agactggggatggtgaatggataccccaatttgaaaagccacaattaatttgaagtttta 682
             ||||  ||||||||| |||||||| ||||| ||| |||| || | ||| |||||||||||
Sbjct: 10194 agacgtgggatggtg-atggatacgccaatatgacaagcgacga-taaattgaagtttta 10251

                    
Query: 683   caacgaa 689
             |||||||
Sbjct: 10252 caacgaa 10258


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7214
Number of Sequences: 1807
Number of extensions: 7214
Number of successful extensions: 34
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)