BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZE10RM1.SCF screened BAC_end
         (903 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1259                                                         864   0.0  

>3x_Contig1259 
          Length = 4915

 Score =  864 bits (436), Expect = 0.0
 Identities = 474/484 (97%), Gaps = 2/484 (0%)
 Strand = Plus / Plus

                                                                        
Query: 48   aatcaacgtgtcggcccaatctgctctgtaagataacaacacccaaatccgataacggct 107
            |||||| ||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct: 2294 aatcaaggtgtcggcccagtatgctctgtaagataacaa-acccaaatccgataacggct 2352

                                                                        
Query: 108  tttctggtgatccgactttaccctctttcttagataactcataagaaaactcgattaata 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2353 tttctggtgatccgactttaccctctttcttagataactcataagaaaactcgattaata 2412

                                                                        
Query: 168  gtctaccgtaacccattctttgatattgaggtagtgttaaaatacatgccacattataag 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2413 gtctaccgtaacccattctttgatattgaggtagtgttaaaatacatgccacattataag 2472

                                                                        
Query: 228  catcagctgattccttttcctttgagaaataaccgacaatatgatggcctagttcatcac 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2473 catcagctgattccttttcctttgagaaataaccgacaatatgatggcctagttcatcac 2532

                                                                        
Query: 288  gcctagtcatacagtaaaataaaaatggatcaacatcatagtacaacgttttatgatcca 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2533 gcctagtcatacagtaaaataaaaatggatcaacatcatagtacaacgttttatgatcca 2592

                                                                        
Query: 348  agaaaagtttagacaaaagacatagattacggcaccatgtcctctgtttccgaccatcaa 407
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2593 agaaaagtttagacaaaagacatagattacggcaccatgtcctctgtttccgaccatcaa 2652

                                                                        
Query: 408  tttcaaagaaggaaacatagtcatctctatatatctcgttacctggaggatgtcgtagag 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2653 tttcaaagaaggaaacatagtcatctctatatatctcgttacctggaggatgtcgtagag 2712

                                                                        
Query: 468  tacatttctttctggatcgttcataatggttctttgaatccgaattattggagggaaaaa 527
            |||||||||||||| |||||||||| || ||||||| ||||||| ||||| |||||||||
Sbjct: 2713 tacatttctttctgtatcgttcatattgtttctttg-atccgaaatattgtagggaaaaa 2771

                
Query: 528  tcat 531
            ||||
Sbjct: 2772 tcat 2775


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,434
Number of Sequences: 1807
Number of extensions: 17434
Number of successful extensions: 178
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)