BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZE11FM1.SCF screened BAC_end (1150 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1530 141 4e-33 >3x_Contig1530 Length = 6216 Score = 141 bits (71), Expect = 4e-33 Identities = 99/107 (92%), Gaps = 1/107 (0%) Strand = Plus / Minus Query: 106 gtactaggttgaattactattgcgacactat-catcagtagggtaaaactaacctgtctc 164 |||||| ||| |||||||||||||| | || |||||||||||||||||||||||||||| Sbjct: 5060 gtactaagttcaattactattgcgataacattcatcagtagggtaaaactaacctgtctc 5001 Query: 165 acgactgtctaaacccagctcacgttccctattggtgggtgaacaat 211 ||||| ||||||||||||||||||||||||||| ||||||||||||| Sbjct: 5000 acgacggtctaaacccagctcacgttccctattagtgggtgaacaat 4954 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,319 Number of Sequences: 1807 Number of extensions: 10319 Number of successful extensions: 78 Number of sequences better than 1.0e-20: 1 length of query: 1150 length of database: 10,358,551 effective HSP length: 16 effective length of query: 1134 effective length of database: 10,329,639 effective search space: 11713810626 effective search space used: 11713810626 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)