BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZE12FM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 646 0.0
>3x_Contig1728
Length = 20685
Score = 646 bits (326), Expect = 0.0
Identities = 486/526 (92%), Gaps = 10/526 (1%)
Strand = Plus / Plus
Query: 86 aagggtgaagaggtattgaacagacaagaattggacgcggaagggaatttttccgatgat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7536 aagggtgaagaggtattgaacagacaagaattggacgcggaagggaatttttccgatgat 7595
Query: 146 gatattgatgagaaggatttgcaagtattccaagactcattagcggaaaatggaaaagta 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7596 gatattgatgagaaggatttgcaagtattccaagactcattagcggaaaatggaaaagta 7655
Query: 206 ttggataattataacgaaaggctacaagctttggacctagaagaacagcacagggctagc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7656 ttggataattataacgaaaggctacaagctttggacctagaagaacagcacagggctagc 7715
Query: 266 actgtatctttcggtgacatccaatcggcgtccacaaaattaaaaagatctttgcaatct 325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7716 actgtatcttccggtgacatccaatcggcgtccacaaaattaaaaagatctttgcaatct 7775
Query: 326 caa-gccggagaaccgttggcgtggattcagat-atactgctgatgccactggttcc-at 382
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 7776 caaggccggagaaccgttggcgtggattcagataatactgctgatgccactggttccaat 7835
Query: 383 agcattaacttatgaacccatttcaaac-aaatatttttaatgtcctctttttttgaagt 441
|||||||||||||||||||||| ||||| |||||| | |||||| ||| | | |||||||
Sbjct: 7836 agcattaacttatgaacccattccaaacaaaatatatataatgtactcatatattgaagt 7895
Query: 442 -tttttaaaaaaaaatgaatgaaagc-aaaatgcctgtttaaaa-tgtgggcttgtttta 498
| | |||||||||||||||||||| ||||||| ||||||||| |||||||| || |
Sbjct: 7896 atagtaaaaaaaaaatgaatgaaagcaaaaatgcatgtttaaaagtgtgggctggtatgt 7955
Query: 499 ccctcgaaaactg-attacttcagagatgaataaacccacccgttccggtttcttttctc 557
|| |||||||| ||| ||||||||||||||||| ||||||||| |||||| ||||||
Sbjct: 7956 cctcggaaaactgtattctttcagagatgaataaacgcacccgttctggtttc-tttctc 8014
Query: 558 ttaattcccggcttgttaatttgttggaaaaaaccctggaatgaat 603
||| || | ||| || |||| || ||| ||||||||||||||||||
Sbjct: 8015 ttagtttcgggc-tggtaatctgctgggaaaaaccctggaatgaat 8059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,597
Number of Sequences: 1807
Number of extensions: 27597
Number of successful extensions: 568
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)