BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF03RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1572 1552 0.0
>3x_Contig1572
Length = 12810
Score = 1552 bits (783), Expect = 0.0
Identities = 864/885 (97%), Gaps = 6/885 (0%)
Strand = Plus / Plus
Query: 55 aaggatatgtgtccatgttcagagaaagagtttgtatcgaaatggttcgaagtcggagga 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1960 aaggatatgtgtccatgttcagagaaagagtttgtatcgaaatggttcgaagtcggagga 2019
Query: 115 tcagtagttcaaggttttgcatgtttactatctgaacgatttatgttgaaggcgttacac 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2020 tcagtagttcaaggttttgcatgtttactatctgaacgatttatgttgaaggcgttacac 2079
Query: 175 attatattgataagttgcatggcagaaaatctagacgttgattcgttgagtatagacaaa 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2080 attatattgataagttgcatggcagaaaatctagacgttgattcgttgagtatagacaaa 2139
Query: 235 gtagcagatgttttggcaaaggatgtcaagcaaggtgaacctaacttatacacacacgaa 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2140 gtagcagatgttttggcaaaggatgtcaagcaaggtgaacctaacttatacacacacgaa 2199
Query: 295 attgtcactacagtgataaataaatttggctttaaagttgaatccgcagaaacagaacca 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2200 attgtcactacagtgataaataaatttggctttaaagttgaatccgcagaaacagaacca 2259
Query: 355 gatgatgttagattcaggatcaacatgtcactgattgcaagatggtatggtgtatctgcg 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2260 gatgatgttagattcaggatcaacatgtcactgattgcaagatggtatggtgtatctgcg 2319
Query: 415 ttgaagaagtttgccgccaaggagcccatatcagaagatgagttcatgatccaatggaaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2320 ttgaagaagtttgccgccaaggagcccatatcagaagatgagttcatgatccaatggaaa 2379
Query: 475 ggacagttcccaccatacttccattgtgaccttgatatttgcatgcttcggggatatttt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2380 ggacagttcccaccatacttccattgtgaccttgatatttgcatgcttcggggatatttt 2439
Query: 535 gttagaccattgacaaacaaaattagatacttgtccagaaccactttgtcgctagacgcc 594
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 2440 gttagaccattgacaaacaaaattagatacatgtccagaaccactttgtcgctaga-gcc 2498
Query: 595 aaggaaagattcaaacaactgttccactggcaaagtacatgggaacaggctgatatggta 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2499 aaggaaagattcaaacaactgttccactggcaaagtacatgggaacaggctgatatggta 2558
Query: 655 ccatatatttcggatttaaataccaagaatttgaagatagacacctttattataaagtat 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2559 ccatatatttcggatttaaataccaagaatttgaagatagacacctttattataaagtat 2618
Query: 715 gccagacggaaaagagtcggtaacaaggttatcatcagtgccaggtaaatacannagat- 773
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2619 gccagacggaaaagagtcggtaacaaggttatcatcagtgccaggtaaataca-aagata 2677
Query: 774 atacangatacgcgagaggaacgaagaat-ataaaattag-tatacaag-attctatcag 830
||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||||
Sbjct: 2678 atacaggatacgcgagaggaacgaagaataataaaattagttatacaagaattctatcag 2737
Query: 831 ggttattagnacctattttaaatttaattattattatgancattcaccgngtgcttcgaa 890
||||||||| || |||||| ||||| |||||||| |||| ||||||||| ||||||||||
Sbjct: 2738 ggttattagtacttatttttaattttattattatcatgaccattcaccgtgtgcttcgaa 2797
Query: 891 cgttatgtacattggttgaagggggggaatccttttnctagaaca 935
||||||||||||||||| | |||||||||| |||| ||||||||
Sbjct: 2798 cgttatgtacattggtttgaaggggggaatctttttcctagaaca 2842
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7049
Number of Sequences: 1807
Number of extensions: 7049
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)