BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF04RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1742 706 0.0
>3x_Contig1742
Length = 17167
Score = 706 bits (356), Expect = 0.0
Identities = 409/424 (96%), Gaps = 2/424 (0%)
Strand = Plus / Minus
Query: 265 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7791 gatacaatcatatagaaatacagctgcactcattgcccatgattcttgtggttggttcat 7732
Query: 325 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7731 cattgaaacatgtaaaagctctttacacttgggtaaaatctgtgttacaagagaaatgtc 7672
Query: 385 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7671 cttataggtccattcattagaatcaaaatgtaatctttttagagaagggaaacgcggtag 7612
Query: 445 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7611 atatttgttcaaataaggaaagattgcagggaataatgaaggcaatcccgatagatctaa 7552
Query: 505 gaaataaagtttcggtaattttgatagtttcctttataatcaatgcagcctcttgcaccg 564
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 7551 gaaataaagtttcggtaattttgatag-ttcccttataatcaatgcagcctcttgcaccg 7493
Query: 565 attgaatgtttgttgaattcaaggtgaagtattgtaatgaattcaaactgccttgcgaaa 624
|||||||||||||||||||||| ||||||||||||||||| | || |||| ||||||||
Sbjct: 7492 attgaatgtttgttgaattcaatgtgaagtattgtaatgagtcgaagctgcgttgcgaaa 7433
Query: 625 actctttgataattggttttgccaaattttcaaagtcattaatagccaaa-ctacaccga 683
|||||||||||||||||||| ||||||||| |||||||||| |||||| | |||||||
Sbjct: 7432 gctctttgataattggttttgtcaaattttcgaagtcattaaatgccaaatcaacaccga 7373
Query: 684 tgat 687
||||
Sbjct: 7372 tgat 7369
Score = 400 bits (202), Expect = e-111
Identities = 205/206 (99%)
Strand = Plus / Minus
Query: 46 agcatagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 105
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8010 agcagagtcattgagcttatctaaaatattaccggctgtttcactgattagttcaccatc 7951
Query: 106 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7950 gaaaagtaaatcgtcctgcgatgaaagttcgtccaattgccaattagagtcaattgactt 7891
Query: 166 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7890 ctgcgcgtttctaactaatgctattgctattcttgaattgatttcctctggaatgttctc 7831
Query: 226 gtagttgaagtccaagttaatcaact 251
||||||||||||||||||||||||||
Sbjct: 7830 gtagttgaagtccaagttaatcaact 7805
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9639
Number of Sequences: 1807
Number of extensions: 9639
Number of successful extensions: 79
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)