BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZF05FM1.SCF screened BAC_end
         (977 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1009                                                        1140   0.0  

>3x_Contig1009 
          Length = 4650

 Score = 1140 bits (575), Expect = 0.0
 Identities = 733/768 (95%), Gaps = 17/768 (2%)
 Strand = Plus / Minus

                                                                        
Query: 87   tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541

                                                                        
Query: 147  tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481

                                                                        
Query: 207  atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421

                                                                        
Query: 267  aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361

                                                                        
Query: 327  tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301

                                                                        
Query: 387  aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241

                                                                        
Query: 447  tacattacagtacaatgcagatactcagctaggcgaa-tttttttattttgagaattttt 505
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181

                                                                        
Query: 506  tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121

                                                                        
Query: 566  cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061

                                                                        
Query: 626  acgacgccgacacatagggctgttgctggggccttgtacccttttccccaccgtagttat 685
            |||||||||||||||||||||| ||| |||| | ||||||||||||| ||| |||| || 
Sbjct: 1060 acgacgccgacacatagggctg-tgccgggggcctgtacccttttccacacagtag-taa 1003

                                                                        
Query: 686  tattattaaccattacctttcggtgaatgtttaacggcattaaactgttaaactttattg 745
            || || ||| ||||| | ||||||| ||||||||||||| ||||||| |||||  |||||
Sbjct: 1002 taataataaacattagc-ttcggtg-atgtttaacggca-taaactg-taaac--tattg 949

                                                                        
Query: 746  ttatgcccggtccgtatttaatggcatttttgtcaacccgttaactggggaggagcctaa 805
             |||| ||||||||||| || | ||||||||| |||| ||| ||||||| ||||||   |
Sbjct: 948  gtatg-ccggtccgtatgtagt-gcatttttg-caacacgtaaactgggaaggagc--ta 894

                                                            
Query: 806  aattgattttttaaattggattttctcaaatttaaggggtgcggttta 853
            ||||||||||||||||||   |||||||||||||| ||||||||||||
Sbjct: 893  aattgattttttaaattg--atttctcaaatttaa-gggtgcggttta 849


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7619
Number of Sequences: 1807
Number of extensions: 7619
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)