BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZF05FM1.SCF screened BAC_end (977 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1009 1140 0.0 >3x_Contig1009 Length = 4650 Score = 1140 bits (575), Expect = 0.0 Identities = 733/768 (95%), Gaps = 17/768 (2%) Strand = Plus / Minus Query: 87 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541 Query: 147 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481 Query: 207 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421 Query: 267 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361 Query: 327 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301 Query: 387 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241 Query: 447 tacattacagtacaatgcagatactcagctaggcgaa-tttttttattttgagaattttt 505 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181 Query: 506 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 565 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121 Query: 566 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 625 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061 Query: 626 acgacgccgacacatagggctgttgctggggccttgtacccttttccccaccgtagttat 685 |||||||||||||||||||||| ||| |||| | ||||||||||||| ||| |||| || Sbjct: 1060 acgacgccgacacatagggctg-tgccgggggcctgtacccttttccacacagtag-taa 1003 Query: 686 tattattaaccattacctttcggtgaatgtttaacggcattaaactgttaaactttattg 745 || || ||| ||||| | ||||||| ||||||||||||| ||||||| ||||| ||||| Sbjct: 1002 taataataaacattagc-ttcggtg-atgtttaacggca-taaactg-taaac--tattg 949 Query: 746 ttatgcccggtccgtatttaatggcatttttgtcaacccgttaactggggaggagcctaa 805 |||| ||||||||||| || | ||||||||| |||| ||| ||||||| |||||| | Sbjct: 948 gtatg-ccggtccgtatgtagt-gcatttttg-caacacgtaaactgggaaggagc--ta 894 Query: 806 aattgattttttaaattggattttctcaaatttaaggggtgcggttta 853 |||||||||||||||||| |||||||||||||| |||||||||||| Sbjct: 893 aattgattttttaaattg--atttctcaaatttaa-gggtgcggttta 849 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7619 Number of Sequences: 1807 Number of extensions: 7619 Number of successful extensions: 43 Number of sequences better than 1.0e-20: 1 length of query: 977 length of database: 10,358,551 effective HSP length: 16 effective length of query: 961 effective length of database: 10,329,639 effective search space: 9926783079 effective search space used: 9926783079 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)