BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF06FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1442 1257 0.0
>3x_Contig1442
Length = 8270
Score = 1257 bits (634), Expect = 0.0
Identities = 668/677 (98%), Gaps = 2/677 (0%)
Strand = Plus / Minus
Query: 86 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7970 cctgcgttaactcaaaaggtgttctggacaggttactatgccaaattaaaaatgaagaag 7911
Query: 146 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7910 ttccacattccaggtggtgacactctaggtaacattttgttcaagaaggtcagagaagcc 7851
Query: 206 accggtggtcatttattatttgtgttgaacggtggttccccattgtctagagaagcacaa 265
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7850 accggtggtcatttaagatttgtgttgaacggtggttccccattgtctagagaagcacaa 7791
Query: 266 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7790 gagtttatcacaaacttgatttgtccaatgttgattggttatggtttgactgaaaccatg 7731
Query: 326 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7730 gctaacacaactatcttacaaccagaacattttgaatacggagtcgctggtgacattgtc 7671
Query: 386 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7670 ggtagtatcactgtcaagttggtcgacgttgaagaattgggctacttcgcaaagaattct 7611
Query: 446 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7610 caaggtgaagtctggattaaaggtgaacctgtcactcgagaatattacaaaaacgaggaa 7551
Query: 506 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7550 gagactaagggttctatcacagatgatggctggttcaaaactggtgacattgcggaatgg 7491
Query: 566 actccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcagaat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7490 actccaaagggtcaattaaagattattgaccgtaaaaagaacttggtgaagactcagaat 7431
Query: 626 ggtgaatacatcgcattagagaaagtagaatccgtttacagatcttgtccatttgntcaa 685
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct: 7430 ggtgaatacatcgcattagagaagttagaatccgtttacagatcttgtccatttgttcaa 7371
Query: 686 aacatctgtgtttacgctgatcaaac-aaggtttaacccgtc-gtttcattgttccaaat 743
|||||||||||||||||||||||||| |||||| |||||||| || ||||||||||||||
Sbjct: 7370 aacatctgtgtttacgctgatcaaacaaaggttaaacccgtcggtatcattgttccaaat 7311
Query: 744 gaggctgccatcaccga 760
|||||||||||||||||
Sbjct: 7310 gaggctgccatcaccga 7294
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)