BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZF06RM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig189                                                         1431   0.0  

>3x_Contig189 
          Length = 1476

 Score = 1431 bits (722), Expect = 0.0
 Identities = 771/784 (98%), Gaps = 3/784 (0%)
 Strand = Plus / Plus

                                                                        
Query: 50   ctggcctatacgaattcatactcgaaagattctctggtaagagtaggtatcaagagtgta 109
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 694  ctggcctatacgaattcata-tcgaaagattctctggtaagagtaggtatcaagagtgta 752

                                                                        
Query: 110  aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  aaagatccaaaggacgatccaaagatcaattactttgaagaactaaagaagaaacctaca 812

                                                                        
Query: 170  aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 229
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  aaggaatatattacaaagttgaagtcccagcaaccggaatatagaatgttcagggctcgt 872

                                                                        
Query: 230  tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 289
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  tgaaatagatcgatgtgtgtatataaacgactcttttacgtataacttttgtgagagcta 932

                                                                        
Query: 290  atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 349
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  atcccactatctgtaaataggctatcaaagattcaagatttaaagtcccaaatgagtaaa 992

                                                                        
Query: 350  gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 409
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  gtttggttgtttgtcaaactacaaaagttaatacttacgtatatttatctatttcacaca 1052

                                                                        
Query: 410  ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 469
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 ttgtccttgcaatgaacccttctaaatggtagattgctttgtttccaaggttgagacggt 1112

                                                                        
Query: 470  gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 529
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1113 gatcaaaagtgcatgcagtatcgataattgccaacttcaacggatctgactgggcatctg 1172

                                                                        
Query: 530  aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 589
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1173 aaagcaattgcgtcgttaattcatggactatggttttggcaggaatacaatgggctaata 1232

                                                                        
Query: 590  gatcatatatttatggaacggcattctacaaggttattaacagttctttcttttaatatt 649
            ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1233 gatcata-attcatggaacggcattctacaaggttattaacagttctttcttttaatatt 1291

                                                                        
Query: 650  ttcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcgttt 709
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1292 ttcctagccattttatggatcaccaattgccaatcaggtctgttcaaaggtgtatcgttt 1351

                                                                        
Query: 710  cttaaatggcaatcattttgtagtgaggtagaatctagtgctaagagtgacattctcagn 769
            ||||||||  | |||||||||||||||||||| |||||||||||||||||||||||||  
Sbjct: 1352 cttaaatgcaattcattttgtagtgaggtagattctagtgctaagagtgacattctcaag 1411

                                                                        
Query: 770  tncccctttgacagaatcgctatcctctctagac-attgccctcggcaggtattttttct 828
            | ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 1412 ttcccctttgacagattcgctatcctctctagacaattgccctcggcagttattttttct 1471

                
Query: 829  ttgg 832
            ||||
Sbjct: 1472 ttgg 1475


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6884
Number of Sequences: 1807
Number of extensions: 6884
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)