BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF07FM1.SCF screened BAC_end
(1000 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1760 535 e-152
>3x_Contig1760
Length = 27266
Score = 535 bits (270), Expect = e-152
Identities = 282/286 (98%)
Strand = Plus / Plus
Query: 86 tagcaaagaagttcaactgttctccgttgttcatctctattgtttctgaaccacccaagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26161 tagcaaagaagttcaactgttctccgttgttcatctctattgtttctgaaccacccaagg 26220
Query: 146 aaagaaagacagaaatgaatcaagttcttgagacgataaagagccaatggcatcctaaga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26221 aaagaaagacagaaatgaatcaagttcttgagacgataaagagccaatggcatcctaaga 26280
Query: 206 gagcattggccagagccgaaagaaaaaagagaaaggaactctggtacagagcatgagaaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26281 gagcattggccagagccgaaagaaaaaagagaaaggaactctggtacagagcatgagaaa 26340
Query: 266 aggtaaaagaaaacaacatactgtatatctgtaaatagtaataagataaccatcgacctt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26341 aggtaaaagaaaacaacatactgtatatctgtaaatagtaataagataaccatcgacctt 26400
Query: 326 atgttccaatcgttagtcatcaactttattaaagggtttataacat 371
||||| ||||||||||||||||||| ||||||| || |||||||||
Sbjct: 26401 atgtttcaatcgttagtcatcaactctattaaatggcttataacat 26446
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,074
Number of Sequences: 1807
Number of extensions: 10074
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 1000
length of database: 10,358,551
effective HSP length: 16
effective length of query: 984
effective length of database: 10,329,639
effective search space: 10164364776
effective search space used: 10164364776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)