BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC43ZF08FM1.SCF screened BAC_end (969 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1295 1108 0.0 >3x_Contig1295 Length = 7117 Score = 1108 bits (559), Expect = 0.0 Identities = 631/649 (97%), Gaps = 5/649 (0%) Strand = Plus / Plus Query: 88 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 350 Query: 148 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 207 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 410 Query: 208 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 267 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 470 Query: 268 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 327 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 530 Query: 328 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 387 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 590 Query: 388 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 591 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 650 Query: 448 tttttttgacactttgaacctttaagctgtttttattcgcgntaatgtatattattaaca 507 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 651 tttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaaca 710 Query: 508 aagtgatcgaaactaanatatcagcaggaaaagtcaaaaatagaagggccgagttaaggg 567 |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||| Sbjct: 711 aagtgatcgaaactaaaatatcagcagg-aaagtcaaaaatagaa-ggccgagttaaggg 768 Query: 568 tcctacattaacatcaacgtagtaagattttcttagttactcacaaattccggcccagta 627 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 769 tcctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagta 828 Query: 628 agtagatatatttatgtacgtctttttttcggcattgtagagcatttgctgtaaacttta 687 ||||||||||| |||||||||| |||||||||||||||||||||| |||||||| | ||| Sbjct: 829 agtagatatatatatgtacgtc-ttttttcggcattgtagagcatctgctgtaagc-tta 886 Query: 688 tcaactgtcattacctccttgttcggtcagcatttattaaaacccggct 736 ||| |||||||||| | | || |||||||||||| || ||||||||||| Sbjct: 887 tcagctgtcattactttc-tgctcggtcagcattgatgaaaacccggct 934 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7191 Number of Sequences: 1807 Number of extensions: 7191 Number of successful extensions: 49 Number of sequences better than 1.0e-20: 1 length of query: 969 length of database: 10,358,551 effective HSP length: 16 effective length of query: 953 effective length of database: 10,329,639 effective search space: 9844145967 effective search space used: 9844145967 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)