BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC43ZF08FM1.SCF screened BAC_end
         (969 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1295                                                        1108   0.0  

>3x_Contig1295 
          Length = 7117

 Score = 1108 bits (559), Expect = 0.0
 Identities = 631/649 (97%), Gaps = 5/649 (0%)
 Strand = Plus / Plus

                                                                       
Query: 88  cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cgttggtcaccgtttccaagatgtatgtttcgaaaatggaattactgtcatgggtatgca 350

                                                                       
Query: 148 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggaaacatcgacggtgtttctggtgatattgctttgttggcaccatcattcatcatcac 410

                                                                       
Query: 208 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 cgaagacgatgtctccaccattgtggaaagagttaccaagtctgttgatgatatgaccgt 470

                                                                       
Query: 268 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tctactaaaggctgaaggccatttctgagaaggcttcagctgtgctaagtattctaacga 530

                                                                       
Query: 328 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ctatataacggcacatacgtagacgtattgtgccacctcttctctgtacttgttctttaa 590

                                                                       
Query: 388 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 aactccatgtctcatcataacagttatgtgtcaagcaaatcagttccttttttcctaata 650

                                                                       
Query: 448 tttttttgacactttgaacctttaagctgtttttattcgcgntaatgtatattattaaca 507
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 651 tttttttgacactttgaacctttaagctgtttttattcgcgtaaatgtatattattaaca 710

                                                                       
Query: 508 aagtgatcgaaactaanatatcagcaggaaaagtcaaaaatagaagggccgagttaaggg 567
           |||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||
Sbjct: 711 aagtgatcgaaactaaaatatcagcagg-aaagtcaaaaatagaa-ggccgagttaaggg 768

                                                                       
Query: 568 tcctacattaacatcaacgtagtaagattttcttagttactcacaaattccggcccagta 627
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 769 tcctacattaacatcaacgtagtaagattttcttagtaactcacaaattccggcccagta 828

                                                                       
Query: 628 agtagatatatttatgtacgtctttttttcggcattgtagagcatttgctgtaaacttta 687
           ||||||||||| |||||||||| |||||||||||||||||||||| |||||||| | |||
Sbjct: 829 agtagatatatatatgtacgtc-ttttttcggcattgtagagcatctgctgtaagc-tta 886

                                                            
Query: 688 tcaactgtcattacctccttgttcggtcagcatttattaaaacccggct 736
           ||| |||||||||| | | || |||||||||||| || |||||||||||
Sbjct: 887 tcagctgtcattactttc-tgctcggtcagcattgatgaaaacccggct 934


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7191
Number of Sequences: 1807
Number of extensions: 7191
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)