BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF08RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1236 1455 0.0
>3x_Contig1236
Length = 4331
Score = 1455 bits (734), Expect = 0.0
Identities = 835/854 (97%), Gaps = 14/854 (1%)
Strand = Plus / Minus
Query: 51 ctctcactacagcatcaagtccgaatttgcctatggcaaataatgcctaactcaaaggat 110
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 3730 ctctcactacagcatcaagtccgaatttgcctatggcaaataat-cctaactcaaaggat 3672
Query: 111 tcaagaattaggtctaagcagtccactccccagagtgcaccaccactaggtgaaaaagaa 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3671 tcaagaattaggtctaagcagtccactccccagagtgcaccaccactaggtgaaaaagaa 3612
Query: 171 aaggttacaactcaaactcccacacagagaaatacgaaaccggctaataaacgtgaaatc 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3611 aaggttacaactcaaactcccacacagagaaatacgaaaccggctaataaacgtgaaatc 3552
Query: 231 attgaaggatatgccaaaaaaatactttttcagaaacccaatttcactccagaacttgct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3551 attgaaggatatgccaaaaaaatactttttcagaaacccaatttcactccagaacttgct 3492
Query: 291 ctaatggctgctgaaaatatttacaggagcttgccattgtctgatcaacaaaggaaaact 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3491 ctaatggctgctgaaaatatttacaggagcttgccattgtctgatcaacaaaggaaaact 3432
Query: 351 gtaatttatgacaatgttgcacaaccgaaagtgcgtccaccagagatgaaacattcttct 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3431 gtaatttatgacaatgttgcacaaccgaaagtgcgtccaccagagatgaaacattcttct 3372
Query: 411 ccgacgcctcaagagattttgcaacgtgctcagaaaaagtgaatacaattaataatatat 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3371 ccgacgcctcaagagattttgcaacgtgctcagaaaaagtgaatacaattaataatatat 3312
Query: 471 aatcagttcataatcacaacattgattcaagcaaagaattacgaataatgagtccttttg 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 aatcagttcataatcacaacattgattcaagcaaagaattacgaataatgagtccttttg 3252
Query: 531 ttataatcattatttcaatatatatatgtatgtaaattcaaacatttgggaaagtgtaaa 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 ttataatcattatttcaatatatatatgtatgtaaattcaaacatttgggaaagtgtaaa 3192
Query: 591 cagcagattcctcctttggtacgccgttggctttgtaggatactttccatttcactctga 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 cagcagattcctcctttggtacgccgttggctttgtaggatactttccatttcactctga 3132
Query: 651 gtggctttggggcattcttcactgcgttatcaatccaacttttttgatggatttcatcct 710
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3131 gtggctttggggcattcttcactgcgttatcaatccaacttttttgatggattccatcct 3072
Query: 711 ttgcatangatgacanaacagtatttgattgtggtaaaagtctcaattgttgggctttag 770
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 ttgcataggatgacaaaacagtatttgattgtggtaaaagtctcaattgttgggctttag 3012
Query: 771 gaa-cgctagcatt-atgtaaggtctgtaag-tgcgaaattga-acatttgaaaag-aag 825
||| |||||||||| |||||||||||||||| ||||||||||| |||||||||||| |||
Sbjct: 3011 gaaccgctagcattaatgtaaggtctgtaagttgcgaaattgacacatttgaaaagaaag 2952
Query: 826 aagtcac--tgatggggc-ttctga-tctctag-aattgcaaat--caacttcaaaacat 878
||||||| |||||| || |||||| ||||||| |||||||||| |||||||||||||
Sbjct: 2951 aagtcaccttgatggtgctttctgattctctagaaattgcaaattcaaacttcaaaacat 2892
Query: 879 -tgactggtttaca 891
|||||||||||||
Sbjct: 2891 ctgactggtttaca 2878
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8441
Number of Sequences: 1807
Number of extensions: 8441
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)