BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF09FM1.SCF screened BAC_end
(1024 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 813 0.0
>3x_Contig1215
Length = 7125
Score = 813 bits (410), Expect = 0.0
Identities = 482/496 (97%), Gaps = 9/496 (1%)
Strand = Plus / Plus
Query: 95 gaaattatcatgcgcgttgctactatatacacccgcatgggatgtgattacatagctgtt 154
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2448 gaaattattatgcgcgttgctactatatacacccgcatgggatgtgattacatagctgtt 2507
Query: 155 tctcttttgaaggattggaagtttttggaaagtaagaagattgaatccgaacaggttgaa 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2508 tctcttttgaaggattggaagtttttggaaagtaagaagattgaatccgaacaggttgaa 2567
Query: 215 atccctcaaagttcccactcgaagttgacagataacaagattgaagagccggtcacaaca 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2568 atccctcaaagttcccactcgaagttgacagataacaagattgaagagccggtcacaaca 2627
Query: 275 caaaaggtacgcccaagtctctttgataagtttgactctcaattctcggaaaatacgcga 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2628 caaaaggtacgcccaagtctctttgataagtttgactctcaattctcggaaaatacgcga 2687
Query: 335 tctgtatcctcgtccacgagtgagtcaaaaagtattctcaaccctacttctagggatata 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2688 tctgtatcctcgtccacgagtgagtcaaaaagtattctcaaccctacttctagggatata 2747
Query: 395 aactcttcaaatggacactcangtaaaagtgcaggctctagtttcaacattcttgaattc 454
||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct: 2748 aactcttcaaatggacactcaggtaaaagtgcaggctctagtttcaacattc-tggattc 2806
Query: 455 ttacagaagtgacactcaaaaagtgaccccattctcaagtgccgaattatgctgggacag 514
||||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||
Sbjct: 2807 ttacagaagtgacactcaaaaagtgacccca-tctcaagtgccgaa-tatgct-ggacag 2863
Query: 515 tttcaaggaaaattcaaaaagattcgattccaaaagaaacttcccacacaaccaaaaagt 574
|||||||||||| |||||||||| ||| | |||||||||||||||||||||| ||||||
Sbjct: 2864 tttcaaggaaaa-tcaaaaagatacga-tacaaaagaaacttcccacacaac--aaaagt 2919
Query: 575 ccccatttggatgatt 590
||||| ||||||||||
Sbjct: 2920 cccca-ttggatgatt 2934
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,416
Number of Sequences: 1807
Number of extensions: 12416
Number of successful extensions: 154
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)