BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF09RM1.SCF screened BAC_end
(981 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1215 1096 0.0
>3x_Contig1215
Length = 7125
Score = 1096 bits (553), Expect = 0.0
Identities = 621/640 (97%), Gaps = 3/640 (0%)
Strand = Plus / Minus
Query: 60 tggccaacactggttcatataataccatcagtatgtcagtccttaattactacttatcca 119
||||||||||||||||| | ||||||| |||| | ||||| ||| |||||||||||||||
Sbjct: 3857 tggccaacactggttcacagaataccaacagt-tctcagttcttcattactacttatcca 3799
Query: 120 tctccccatctaaacggtaaacattctcagtttggaaaagtgatagcaggtaaatctgtt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3798 tctccccatctaaacggtaaacattctcagtttggaaaagtgatagcaggtaaatctgtt 3739
Query: 180 gttcgcacaattgagcatatggatgtcgatgaaaatggagtaccaaatgattcaataatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3738 gttcgcacaattgagcatatggatgtcgatgaaaatggagtaccaaatgattcaataatc 3679
Query: 240 atagaagattgcggtgaatggtctgataatatggaaatacctctttataatgcatgcaac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3678 atagaagattgcggtgaatggtctgataatatggaaatacctctttataatgcatgcaac 3619
Query: 300 gatacaattggtaatgatttttatgaagaaaatccagatgatgacacccacttcgaaggc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3618 gatacaattggtaatgatttttatgaagaaaatccagatgatgacacccacttcgaaggc 3559
Query: 360 gaagattttgccaaagcatatgaagcagcagagaccattaaagaatctggttctctgcta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3558 gaagattttgccaaagcatatgaagcagcagagaccattaaagaatctggttctctgcta 3499
Query: 420 ttcaagaaacgagactttaggaacgctcttttcaaatacaagaaggccttgaaatatact 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3498 ttcaagaaacgagactttaggaacgctcttttcaaatacaagaaggccttgaaatatact 3439
Query: 480 actgcatatactcctgaagtggatatagacaagtttcataatgagaagttcactattcag 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 3438 actgcatatactcctgaagtggatatagacaagtttcataatgagaagttcactatccag 3379
Query: 540 aaacatanactatatttgaacatctgtctgatgctattttatttgaaagagtatcatgaa 599
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3378 aaacataaactatatttgaacatctgtctgatgctattttatttgaaagagtatcatgaa 3319
Query: 600 tcaatcaaatactctaccttttttagtgaatgatgaccgtgttagaaaacaagacaaggc 659
|||||||||||||||||| ||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 3318 tcaatcaaatactctacc-tttttagtggatgatgaccgtgtaggaaacaaagacaaggc 3260
Query: 660 aaaggcttactttaagaaggggccattggctttatgcttt 699
|||||| ||| |||||||||||| |||| |||||||||||
Sbjct: 3259 aaaggcatac-ttaagaaggggcaattgtctttatgcttt 3221
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8391
Number of Sequences: 1807
Number of extensions: 8391
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 981
length of database: 10,358,551
effective HSP length: 16
effective length of query: 965
effective length of database: 10,329,639
effective search space: 9968101635
effective search space used: 9968101635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)