BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF10RM1.SCF screened BAC_end
(994 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1713 634 0.0
>3x_Contig1713
Length = 18539
Score = 634 bits (320), Expect = 0.0
Identities = 394/408 (96%), Gaps = 8/408 (1%)
Strand = Plus / Minus
Query: 68 accacttgtggtgcaggctttcttacaaaacactaaattgatcgatcccactgtcttctg 127
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 8855 accacttggggttcaggctttcttacaaaacactaaattgatcgatcccactgt-ttctg 8797
Query: 128 atccaatagtcgatatcgatgaacattgtgtttccaacaatagtccattttcgcccgggt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8796 atccaatagtcgatatcgatgaacattgtgtttccaacaatagtccattttcgcccgggt 8737
Query: 188 tcatgtccatcaagactctaaattggtcaagaccagaagtgtacaatttgcaagccagat 247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8736 tcatgtccatcaagactctaaattggtcaagaccagaagtgtacaatttgcaagccagat 8677
Query: 248 ccgtgttatacaccaacccttctgctcaaccgctttcggtcacttttccttaacaatcaa 307
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 8676 ccgtgttatacaccaacccttctgctcaaccgctttcggtcac-tttccttaacaatcaa 8618
Query: 308 agttctttgcaagttccagtaacatcggctaactctgtggggtaagaagaagaaggaagc 367
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 8617 agttctttgcaagttccagtaacatcggctaactctgtgggtaaagaagaagaaggaagc 8558
Query: 368 ccagatcaagattgg-aaccaaattccatattgttcaatggggttgttacaaaaaattca 426
||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 8557 ccagatcaagattggaaaccaaattccatattgttcaat-gggttgttac-aaaaattca 8500
Query: 427 tcggggaagttttaaaaatcaccaaaaattcgaatccatttgccattt 474
|| ||||||| | |||||||||| |||||||| |||||||||||||||
Sbjct: 8499 tc-gggaagtataaaaaatcacc-aaaattcg-atccatttgccattt 8455
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,212
Number of Sequences: 1807
Number of extensions: 16212
Number of successful extensions: 116
Number of sequences better than 1.0e-20: 1
length of query: 994
length of database: 10,358,551
effective HSP length: 16
effective length of query: 978
effective length of database: 10,329,639
effective search space: 10102386942
effective search space used: 10102386942
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)