BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZF12RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1799 1094 0.0
>3x_Contig1799
Length = 39855
Score = 1094 bits (552), Expect = 0.0
Identities = 631/651 (96%), Gaps = 5/651 (0%)
Strand = Plus / Plus
Query: 48 tacttaaaaccttcatttattcttccgtggggttaagaacatcaagccaaaatggactca 107
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 18443 tactcaaaaccttcatttcttcttccgtggggttaagaacatcaagccaaaatggactca 18502
Query: 108 catcatcaaagtccaaagtcgatggagcagagttttttgggggtaaagttgagcttgtaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18503 catcatcaaagtccaaagtcgatggagcagagttttttgggggtaaagttgagcttgtaa 18562
Query: 168 gattcgcaacacctgtactgatgcctgctcctggagtgacctctcttgtatcagcattag 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18563 gattcgcaacacctgtactgatgcctgctcctggagtgacctctcttgtatcagcattag 18622
Query: 228 aggacattgcttgatggccataaactgatccaacgaacaattcgtcaaatttttgaccgg 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18623 aggacattgcttgatggccataaactgatccaacgaacaattcgtcaaatttttgaccgg 18682
Query: 288 gttgcaacaatcccgaaattgtaggagagtgaatagttgaatccaagtcttctctaaagt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18683 gttgcaacaatcccgaaattgtaggagagtgaatagttgaatccaagtcttctctaaagt 18742
Query: 348 atgtgaacctgaaaatttctggattatttgatataatgtgtgggggatactgaatattcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18743 atgtgaacctgaaaatttctggattatttgatataatgtgtgggggatactgaatattcc 18802
Query: 408 ttccaacaaggagatcatttcttctagaatccgtaaaaggcctgctttcactaaactttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18803 ttccaacaaggagatcatttcttctagaatccgtaaaaggcctgctttcactaaactttg 18862
Query: 468 aatttgacctaacagatgcagccttggaatttgatccatgtggctgtttagcgttaccgg 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18863 aatttgacctaacagatgcagccttggaatttgatccatgtggctgtttagcgttacc-g 18921
Query: 528 ggggcttggttcgagattgcagcactagaaagcccaggtagtttaggattaccccgcttt 587
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 18922 ggggcttggttcgagattgcagcactagaaagcccaggtaggttaagattaccccgcttt 18981
Query: 588 -aatgccatggtgtcaactncctttggtcttagccttccattcttaaaagtttctgtctc 646
|||||||||||||||||| ||||||||||||||| |||||||| ||| |||||||||
Sbjct: 18982 aaatgccatggtgtcaactt-ctttggtcttagcctcccattcttcaaatgttctgtctc 19040
Query: 647 gttgacccttataattcctaacttttgggacgtcaaattttggttattatt 697
||||||||| || |||||| | | ||||||||| ||| ||||||||||||
Sbjct: 19041 gttgaccctagtatttcctagc-tctgggacgtc-aatattggttattatt 19089
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8151
Number of Sequences: 1807
Number of extensions: 8151
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)