BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG01FM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1610 872 0.0
>3x_Contig1610
Length = 13981
Score = 872 bits (440), Expect = 0.0
Identities = 473/480 (98%), Gaps = 3/480 (0%)
Strand = Plus / Plus
Query: 88 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3281 caaagaatttctttccttcacatctatttatcaaacaaaaacaactagaaaacatttcgt 3340
Query: 148 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3341 aaacaaaagaacttaggatccaagaaacagggaaacatttcactttgtatccttgcgttt 3400
Query: 208 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3401 aggtgtcttgtgcaagggagaacggttcgtgagacacttgatcgagagttcatactcaga 3460
Query: 268 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3461 aactcgttagtaggcgccgaataattacagaataaaggaagatctaacgtcgctattcga 3520
Query: 328 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3521 tatactgatacttttataaagtgaaccaagtgtgaaaatttattatttgccgtttgctgt 3580
Query: 388 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3581 tgcagttccttgttttatttctataattttggagactgactattgaaacgacccgctagg 3640
Query: 448 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3641 atttggaaacactagtaagttataataccctttacaaatcgttatgtcagcttccgaggt 3700
Query: 508 tgcccagttttt-gtaaacattattatttactcc-gacccaactgtccgttttcaagcgg 565
|||||||||||| | ||||||||| | ||||||| |||||||| |||||| |||||||||
Sbjct: 3701 tgcccagtttttggaaaacattatca-ttactccggacccaacggtccgtcttcaagcgg 3759
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8639
Number of Sequences: 1807
Number of extensions: 8639
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)