BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG01RM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1278 1334 0.0
>3x_Contig1278
Length = 6932
Score = 1334 bits (673), Expect = 0.0
Identities = 720/729 (98%), Gaps = 5/729 (0%)
Strand = Plus / Plus
Query: 46 attaccaatgtgcgatgagatt-aaatgcttgacaa-ttc-cacagctatgagacaactt 102
|||||||||||||||||||||| ||||||| ||||| ||| |||||||||||||||||||
Sbjct: 4795 attaccaatgtgcgatgagattcaaatgctagacaaattcacacagctatgagacaactt 4854
Query: 103 aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4855 aagttcgccaccgtatgacatgatctcgaagaccgaaaactagaaaattaattcactatg 4914
Query: 163 gggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcaggacta 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4915 gggaagtttggactaccttaaactttattcattaaaatcttaggaaatcgttcaggacta 4974
Query: 223 atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4975 atcttctaaagtagtatggtattgttttaattatagctttttcagtatatctgaaatagt 5034
Query: 283 aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5035 aaatattaatgaagatgcatatatagacgaattgaaaaaaggtactaacgacgtggggat 5094
Query: 343 atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5095 atgaaagcattaggaatgaacgttaataatcgtggtattgtaaagtgatgaaggaactga 5154
Query: 403 aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5155 aacaatgaagtttgcattatttttcggtttgaagagaaatcttcaagctgcaaatgtgaa 5214
Query: 463 agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5215 agtaaatactcaaaagatggattcttttatagtatctgttaacctattacaacaatagag 5274
Query: 523 cagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttgccgg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5275 cagcgatggcggcgataccagcaccggcaccgaaggtgaccttgccagcgttgttgccgg 5334
Query: 583 attcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatcaccga 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5335 attcagtcttgatccagacggattgagtaccagtggtagcttgaatttggccatcaccga 5394
Query: 643 tttgagagactggggcaacagtttggacgacgttaggatcctttgatgtggtttctggag 702
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 5395 tttgagagactggggcaacagtttggacgacgttagaatcctttgatgtggtttctggag 5454
Query: 703 caatggtagtggtttcctggggcagctgaagaagtttctggggcagctgaagaaagtttc 762
||||||||||||||| ||||||||||||| ||||||||||||||||||| || |||||||
Sbjct: 5455 caatggtagtggttt-ctggggcagctgaggaagtttctggggcagctg-aggaagtttc 5512
Query: 763 agaactact 771
|||||||||
Sbjct: 5513 agaactact 5521
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6566
Number of Sequences: 1807
Number of extensions: 6566
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)