BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG02RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1338 1606 0.0
>3x_Contig1338
Length = 8134
Score = 1606 bits (810), Expect = 0.0
Identities = 842/849 (99%), Gaps = 3/849 (0%)
Strand = Plus / Minus
Query: 47 taaattgtatgtaatggagattgatacttatacagtttcaacatgcttagatgttagatg 106
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5315 taaattgtatgtaatagagattgatacttatacagtttcaacatgcttagatgttagatg 5256
Query: 107 ggtacaagaagattctgacagaagcaccgaaagtcttagctggcaagttagatctgaatg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5255 ggtacaagaagattctgacagaagcaccgaaagtcttagctggcaagttagatctgaatg 5196
Query: 167 tagctctaacgacaccggagttaccgtgtgttctgttgatcttaccccagataactctga 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5195 tagctctaacgacaccggagttaccgtgtgttctgttgatcttaccccagataactctga 5136
Query: 227 tcttggaacctctgacttccttggagcatctgtagacataggcgactctcttacccaagt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5135 tcttggaacctctgacttccttggagcatctgtagacataggcgactctcttacccaagt 5076
Query: 287 agaacttagcgtcttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5075 agaacttagcgtcttctgggttggcaacaccttcaatcttgaccaaagagacgtttgggt 5016
Query: 347 tgttaacgctcttggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5015 tgttaacgctcttggatctttggtatgacaaatgcttacctttgacgtacactgtaaaaa 4956
Query: 407 ttaaaccacgtagggatgaaaaaggttagtaagggtgagtttttaattggaggtccagat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4955 ttaaaccacgtagggatgaaaaaggttagtaagggtgagtttttaattggaggtccagat 4896
Query: 467 agtacaggtaatgctgccacgagtgaataaaataatattcatccatgaaaacagaacctc 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4895 agtacaggtaatgctgccacgagtgaataaaataatattcatccatgaaaacagaacctc 4836
Query: 527 atatgattgtcataataatgaagagtataccccattagaagggaatgaacatggatttgt 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4835 atatgattgtcataataatgaagagtataccccattagaagggaatgaacatggatttgt 4776
Query: 587 tatgtctgtcctggctaatatcagtactaaattttcacgtactaagtacttccgtcgtat 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4775 tatgtctgtcctggctaatatcagtactaaattttcacgtactaagtacttccgtcgtat 4716
Query: 647 tccgaaaaaggttgatagagttgaaatcagtcacatctaaatgatcttatctatgataaa 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4715 tccgaaaaaggttgatagagttgaaatcagtcacatctaaatgatcttatctatgataaa 4656
Query: 707 tgaacatccatgatatcatcgttgcaatctatttcc-accaccaccaagtatagtttttc 765
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4655 tgaacatccatgatatcatcgttgcaatctatttccaaccaccaccaagtatagtttttc 4596
Query: 766 atgcttccaatattctgtaacgtattccaatagaggacctttccactggtctacgcatat 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4595 atgcttccaatattctgtaacgtattccaatagaggacctttccactggtctacgcatat 4536
Query: 826 agcattgctttcatattcatcacaatatattctggntaatattgtttgaagattacgaag 885
|||||||| ||||||||||||||||||||| |||| | |||||||||||||||||||| |
Sbjct: 4535 agcattgc-ttcatattcatcacaatatatcctggtt-atattgtttgaagattacgatg 4478
Query: 886 tgcttaaaa 894
|||||||||
Sbjct: 4477 tgcttaaaa 4469
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6011
Number of Sequences: 1807
Number of extensions: 6011
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)