BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG03FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1762 1400 0.0
>3x_Contig1762
Length = 22098
Score = 1400 bits (706), Expect = 0.0
Identities = 818/847 (96%), Gaps = 7/847 (0%)
Strand = Plus / Minus
Query: 88 tttacaatttcaagctcataaatatttagttgaaactcttcccgcattaggtgtagacac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8260 tttacaatttcaagctcataaatatttagttgaaactcttcccgcattaggtgtagacac 8201
Query: 148 atagtaactttggcaagccatgaaggatcttctttatacaagggatgagcgaatgtgtca 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8200 atagtaactttggcaagccatgaaggatcttctttatacaagggatgagcgaatgtgtca 8141
Query: 208 ttacaattatcaaggtttagaaggatagtgttttgtaatgcaatgaaatcctgatcagag 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8140 ttacaattatcaaggtttagaaggatagtgttttgtaatgcaatgaaatcctgatcagag 8081
Query: 268 tctgcaacatgtagcggagaggtgttagatttttccagctctgatctttgtgcttgccat 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8080 tctgcaacatgtagcggagaggtgttagatttttccagctctgatctttgtgcttgccat 8021
Query: 328 atagctaaaaataaatgaaaagtttcgtgtagtacgtatttgataccaataaatattgat 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8020 atagctaaaaataaatgaaaagtttcgtgtagtacgtatttgataccaataaatattgat 7961
Query: 388 ttcaaggcatttccagtcggatacgtatgaggagaaggaacaatttcccaagaattgctg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7960 ttcaaggcatttccagtcggatacgtatgaggagaaggaacaatttcccaagaattgctg 7901
Query: 448 ctgcttattatcatataagaatctgaaatatagtaacaatcatcaggactcgagacatgg 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7900 ctgcttattatcatataagaatctgaaatatagtaacaatcatcaggactcgagacatgg 7841
Query: 508 agttggaactcgggggatgtaatctccagatatgggttgtacaatattagtgtatccttc 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7840 agttggaactcgggggatgtaatctccagatatgggttgtacaatattagtgtatccttc 7781
Query: 568 tgcanaaaggcgaagtaaccgatgagatcttccgaattatatacacaaacgtctcgcaca 627
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7780 tgcaaaaaggcgaagtaaccgatgagatcttccgaattatatacacaaacgtctcgcaca 7721
Query: 628 atccccagttntatatccatgggttttcgtcattgaaattggagagtatccaaatgcttt 687
||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 7720 atcccaggttttatatccat-ggttttcgtcattgaaattggagagtatccaaatgcttt 7662
Query: 688 gaacctgacattcgtcatgacagaantgttcaagttgaagattcatatcttgccccaa-c 746
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
Sbjct: 7661 gaacctgacattcgtcatgacagaattgttcaagttgaagatccatatcttgccccaacc 7602
Query: 747 attcacgttatctaatatt-caatagcttgcttatcacccatctgggttgatactacttt 805
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 7601 attcacgttatctaatattccaatagcttgcttatcacccatcttggttgatactacttt 7542
Query: 806 tccttgggacgataatg-aggtacttcccctgcaattaattttgtttagtaaacatcttt 864
||| | ||||||||||| |||||||| | ||||| | | ||||||| ||||||||||||
Sbjct: 7541 tcccttggacgataatgaaggtactttcactgcagtaatttttgttaggtaaacatcttt 7482
Query: 865 gg-aatgtcacttga-attgactgatca-gtgccttcatggaaggccgcatttccatgat 921
|| |||||||||||| |||||||||||| |||| ||||| | |||| ||||||||||||
Sbjct: 7481 ggaaatgtcacttgatattgactgatcaggtgcattcatcgtaggcgtcatttccatgat 7422
Query: 922 tttctcc 928
| |||||
Sbjct: 7421 tctctcc 7415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6879
Number of Sequences: 1807
Number of extensions: 6879
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)