BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG03RM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig343 1364 0.0
>3x_Contig343
Length = 1398
Score = 1364 bits (688), Expect = 0.0
Identities = 715/722 (99%), Gaps = 2/722 (0%)
Strand = Plus / Minus
Query: 50 ttatccccgtacgctctgcatcc-aaaatatcttgtatcggaataactttctcggcaacc 108
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttatccccgtacgctctgcatcccaaaatatcttgtatcggaataactttctcggcaacc 663
Query: 109 ctctcagactcatccttataataactgaattgcgtcttccttaagacgcaccagtacttg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctctcagactcatccttataataactgaattgcgtcttccttaagacgcaccagtacttg 603
Query: 169 tgattgtatttcgtcttcttgacactccaattagtccagttctttgccaattgtttcgtg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tgattgtatttcgtcttcttgacactccaattagtccagttctttgccaattgtttcgtg 543
Query: 229 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatctct 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gatgaaatagacttcgagacggtgggtttttttacaagatatgacgaataaataatctct 483
Query: 289 tcattatcttcgaaggtttgttgtcccatttcttcttgcagagacaactgtctagtacta 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcattatcttcgaaggtttgttgtcccatttcttcttgcagagacaactgtctagtacta 423
Query: 349 tgatattgatttcgccgttttccttgtaaaaatgatgatttccaggcggcacgatcggcc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgatattgatttcgccgttttccttgtaaaaatgatgatttccaggcggcacgatcggcc 363
Query: 409 agtggtcattgtaatttgttgtcgtttttgtttaatcgtttaggattcgtgccaagttcc 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 agtggtcattgtaatttgttgtcgtttttgtttaatcgtttaggattcgtgccaagttcc 303
Query: 469 tttctttatacaaataatcctttgtttcgaaaatatatggaaatggatcatgcaggaaac 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttctttatacaaataatcctttgtttcgaaaatatatggaaatggatcatgcaggaaac 243
Query: 529 acaagaaaccgatatcctgaatacaaaaatgaacgctgatgaaagtatgtagatcttcac 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 acaagaaaccgatatcctgaatacaaaaatgaacgctgatgaaagtatgtagatcttcac 183
Query: 589 tactacctgctcggttaggatgagtacttgaacatagtgttggtattctctggaaaatcg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tactacctgctcggttaggatgagtacttgaacatagtgttggtattctctggaaaatcg 123
Query: 649 gattcaagaaaggtaacgtttttattcaaatcataaattctatataatgaattgtgaatc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gattcaagaaaggtaacgtttttattcaaatcataaattctatataatgaattgtgaatc 63
Query: 709 gctagatntatgtataa-gttagaaacgccaggataatttattngacatatatgtttgcc 767
||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 62 gctagatttatgtataaggttagaaacgccaggataatttattgacaatatatgtttgcc 3
Query: 768 aa 769
||
Sbjct: 2 aa 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7377
Number of Sequences: 1807
Number of extensions: 7377
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)