BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC43ZG04FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig433 313 3e-85
3x_Contig1684 283 3e-76
>3x_Contig433
Length = 1879
Score = 313 bits (158), Expect = 3e-85
Identities = 212/225 (94%), Gaps = 4/225 (1%)
Strand = Plus / Minus
Query: 455 gggattttgctaagaagagctttgctttcagagattagagcaagaacgaattangtaatt 514
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1879 gggattttg-taagaagagctttgctttcagagattagagcaagaacgaattaggtaatt 1821
Query: 515 gaacgttaaagttaacttctttgcgtttatccttttttttattcccatctctctactttt 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1820 gaacgttaaagttaacttctttgcgtttatccttttttttattcccatctctctactctt 1761
Query: 575 cccttttcgaaagac-actatattcctataaactgccctttcac-atattatgcctttaa 632
||||||||||||||| |||||||||||||||||||||||||||| |||||||| || |||
Sbjct: 1760 cccttttcgaaagacaactatattcctataaactgccctttcacaatattatg-ctataa 1702
Query: 633 ggttcacaagatgataccatttggaatgggcatttgctattttcc 677
||||||||||||||||| ||||| | | |||| |||||||||||
Sbjct: 1701 ggttcacaagatgatactatttgtatagtgcatctgctattttcc 1657
>3x_Contig1684
Length = 14609
Score = 283 bits (143), Expect = 3e-76
Identities = 150/151 (99%), Gaps = 1/151 (0%)
Strand = Plus / Minus
Query: 86 ccaagttcgctaaggactggactgtctccggtaacggtccaatcgttcttgaatacgaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 ccaagttcgctaaggactggactgtctccggtaacggtccaatcgttcttgaatacgaaa 91
Query: 146 cttacagatatggtggtcactctatgtctgatccaggtactacttacagaaccagagatg 205
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 90 cttacagatatggtggtcactctatgtctgatcca-gtactacttacagaaccagagatg 32
Query: 206 aaatccaacacatgagatctaagaacgatcc 236
|||||||||||||||||||||||||||||||
Sbjct: 31 aaatccaacacatgagatctaagaacgatcc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8873
Number of Sequences: 1807
Number of extensions: 8873
Number of successful extensions: 86
Number of sequences better than 1.0e-20: 2
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)